Gene: COL2A1

Basic information

Tag Content
Uniprot ID P02458; A6NGA0; Q12985; Q14009; Q14044; Q14045; Q14046; Q14047; Q14056; Q14058; Q16672; Q1JQ82; Q2V4X7; Q6LBY1; Q6LBY2; Q6LBY3; Q96IT5; Q99227; Q9UE38; Q9UE39; Q9UE40; Q9UE41; Q9UE42; Q9UE43;
Entrez ID 1280
Genbank protein ID CAA40330.1; AAC41772.1; CAA34683.1; CAA26226.1; AAA73873.1; CAA34284.1; AAD15287.1; CAA26224.1; CAA34282.1; AAA52039.1; CAA34279.1; AAI16450.1; AAH07252.1; AAA58428.2; CAA34278.1; AAB60370.1; CAA34280.1; CAA34281.1; CAA25092.1; CAA26225.1; CAA34283.1; CAA26223.1; CAA32030.1; AAA52038.1; AAA52051.1; AAP35869.1; CAA34488.1; AAA51997.1; CAA26227.1; CAA29604.1;
Genbank nucleotide ID NM_033150.2; NM_001844.4;
Ensembl protein ID ENSP00000369889; ENSP00000338213;
Ensembl nucleotide ID ENSG00000139219
Gene name Collagen alpha-1(II) chain
Gene symbol COL2A1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Type II collagen is specific for cartilaginous tissues. It is essential for the normal embryonic development of the skeleton, for linear growth and for the ability of cartilage to resist compressive forces.
Sequence
MIRLGAPQTL VLLTLLVAAV LRCQGQDVQE AGSCVQDGQR YNDKDVWKPE PCRICVCDTG 60
TVLCDDIICE DVKDCLSPEI PFGECCPICP TDLATASGQP GPKGQKGEPG DIKDIVGPKG 120
PPGPQGPAGE QGPRGDRGDK GEKGAPGPRG RDGEPGTPGN PGPPGPPGPP GPPGLGGNFA 180
AQMAGGFDEK AGGAQLGVMQ GPMGPMGPRG PPGPAGAPGP QGFQGNPGEP GEPGVSGPMG 240
PRGPPGPPGK PGDDGEAGKP GKAGERGPPG PQGARGFPGT PGLPGVKGHR GYPGLDGAKG 300
EAGAPGVKGE SGSPGENGSP GPMGPRGLPG ERGRTGPAGA AGARGNDGQP GPAGPPGPVG 360
PAGGPGFPGA PGAKGEAGPT GARGPEGAQG PRGEPGTPGS PGPAGASGNP GTDGIPGAKG 420
SAGAPGIAGA PGFPGPRGPP GPQGATGPLG PKGQTGEPGI AGFKGEQGPK GEPGPAGPQG 480
APGPAGEEGK RGARGEPGGV GPIGPPGERG APGNRGFPGQ DGLAGPKGAP GERGPSGLAG 540
PKGANGDPGR PGEPGLPGAR GLTGRPGDAG PQGKVGPSGA PGEDGRPGPP GPQGARGQPG 600
VMGFPGPKGA NGEPGKAGEK GLPGAPGLRG LPGKDGETGA AGPPGPAGPA GERGEQGAPG 660
PSGFQGLPGP PGPPGEGGKP GDQGVPGEAG APGLVGPRGE RGFPGERGSP GAQGLQGPRG 720
LPGTPGTDGP KGASGPAGPP GAQGPPGLQG MPGERGAAGI AGPKGDRGDV GEKGPEGAPG 780
KDGGRGLTGP IGPPGPAGAN GEKGEVGPPG PAGSAGARGA PGERGETGPP GPAGFAGPPG 840
ADGQPGAKGE QGEAGQKGDA GAPGPQGPSG APGPQGPTGV TGPKGARGAQ GPPGATGFPG 900
AAGRVGPPGS NGNPGPPGPP GPSGKDGPKG ARGDSGPPGR AGEPGLQGPA GPPGEKGEPG 960
DDGPSGAEGP PGPQGLAGQR GIVGLPGQRG ERGFPGLPGP SGEPGKQGAP GASGDRGPPG 1020
PVGPPGLTGP AGEPGREGSP GADGPPGRDG AAGVKGDRGE TGAVGAPGAP GPPGSPGPAG 1080
PTGKQGDRGE AGAQGPMGPS GPAGARGIQG PQGPRGDKGE AGEPGERGLK GHRGFTGLQG 1140
LPGPPGPSGD QGASGPAGPS GPRGPPGPVG PSGKDGANGI PGPIGPPGPR GRSGETGPAG 1200
PPGNPGPPGP PGPPGPGIDM SAFAGLGPRE KGPDPLQYMR ADQAAGGLRQ HDAEVDATLK 1260
SLNNQIESIR SPEGSRKNPA RTCRDLKLCH PEWKSGDYWI DPNQGCTLDA MKVFCNMETG 1320
ETCVYPNPAN VPKKNWWSSK SKEKKHIWFG ETINGGFHFS YGDDNLAPNT ANVQMTFLRL 1380
LSTEGSQNIT YHCKNSIAYL DEAAGNLKKA LLIQGSNDVE IRAEGNSRFT YTALKDGCTK 1440
HTGKWGKTVI EYRSQKTSRL PIIDIAPMDI GGPEQEFGVD IGPVCFL 1487

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCOL2A1407142P02459Bos taurusPredictionMore>>
1:1 orthologCOL2A1A0A452E0F9Capra hircusPredictionMore>>
1:1 orthologCOL2A1791241A0A5F5PIB7Equus caballusPredictionMore>>
1:1 orthologCOL2A11280P02458Homo sapiensPredictionMore>>
1:1 orthologCol2a112824P28481CPOMus musculusPublicationMore>>
1:1 orthologCOL2A1451860H2Q5S8Pan troglodytesPredictionMore>>
1:1 orthologCOL2A1100009005G1T5V9Oryctolagus cuniculusPredictionMore>>
1:1 orthologCol2a1F1LRM7Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005201 extracellular matrix structural constituentIBA
GO:0030020 extracellular matrix structural constituent conferring tensile strengthRCA
GO:0030020 extracellular matrix structural constituent conferring tensile strengthHDA
GO:0030020 extracellular matrix structural constituent conferring tensile strengthIC
GO:0042289 MHC class II protein bindingIPI
GO:0042802 identical protein bindingNAS
GO:0043394 proteoglycan bindingIDA
GO:0046872 metal ion bindingIEA
GO:0048407 platelet-derived growth factor bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0001501 skeletal system developmentIMP
GO:0001501 skeletal system developmentIBA
GO:0001502 cartilage condensationIEA
GO:0001894 tissue homeostasisIEA
GO:0001958 endochondral ossificationIEA
GO:0002062 chondrocyte differentiationIEA
GO:0003007 heart morphogenesisIEA
GO:0006029 proteoglycan metabolic processIEA
GO:0007417 central nervous system developmentIEA
GO:0007601 visual perceptionIMP
GO:0007605 sensory perception of soundIMP
GO:0010468 regulation of gene expressionIEA
GO:0030198 extracellular matrix organizationIBA
GO:0030198 extracellular matrix organizationTAS
GO:0030199 collagen fibril organizationIMP
GO:0030199 collagen fibril organizationIBA
GO:0030903 notochord developmentIBA
GO:0042472 inner ear morphogenesisIEA
GO:0050776 regulation of immune responseTAS
GO:0051216 cartilage developmentTAS
GO:0060021 roof of mouth developmentIEA
GO:0060174 limb bud formationIEA
GO:0060272 embryonic skeletal joint morphogenesisIMP
GO:0060351 cartilage development involved in endochondral bone morphogenesisIEA
GO:0071599 otic vesicle developmentIEA
GO:0071773 cellular response to BMP stimulusIEA
GO:0097065 anterior head developmentIEA
GO:2001240 negative regulation of extrinsic apoptotic signaling pathway in absence of ligandIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionHDA
GO:0005576 extracellular regionTAS
GO:0005581 collagen trimerIBA
GO:0005585 collagen type II trimerIBA
GO:0005585 collagen type II trimerIDA
GO:0005604 basement membraneIEA
GO:0005615 extracellular spaceIMP
GO:0005615 extracellular spaceIBA
GO:0005788 endoplasmic reticulum lumenTAS
GO:0031012 extracellular matrixIBA
GO:0062023 collagen-containing extracellular matrixHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1266738 Developmental BiologyTAS
R-HSA-1280218 Adaptive Immune SystemTAS
R-HSA-1442490 Collagen degradationIEA
R-HSA-1442490 Collagen degradationTAS
R-HSA-1474228 Degradation of the extracellular matrixIEA
R-HSA-1474228 Degradation of the extracellular matrixTAS
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474290 Collagen formationTAS
R-HSA-162582 Signal TransductionTAS
R-HSA-1650814 Collagen biosynthesis and modifying enzymesTAS
R-HSA-168256 Immune SystemTAS
R-HSA-186797 Signaling by PDGFTAS
R-HSA-198933 Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cellTAS
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structuresTAS
R-HSA-216083 Integrin cell surface interactionsIEA
R-HSA-216083 Integrin cell surface interactionsTAS
R-HSA-3000171 Non-integrin membrane-ECM interactionsTAS
R-HSA-3000178 ECM proteoglycansTAS
R-HSA-3000178 ECM proteoglycansIEA
R-HSA-375165 NCAM signaling for neurite out-growthTAS
R-HSA-419037 NCAM1 interactionsTAS
R-HSA-422475 Axon guidanceTAS
R-HSA-6806834 Signaling by METTAS
R-HSA-8874081 MET activates PTK2 signalingTAS
R-HSA-8875878 MET promotes cell motilityTAS
R-HSA-8948216 Collagen chain trimerizationTAS
R-HSA-9006934 Signaling by Receptor Tyrosine KinasesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0106 Calcium
KW-0898 Cataract
KW-0176 Collagen
KW-0209 Deafness
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0242 Dwarfism
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0379 Hydroxylation
KW-0479 Metal-binding
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal
KW-0757 Stickler syndrome

Interpro

InterPro ID InterPro Term
IPR008160 Collagen
IPR000885 Fib_collagen_C
IPR001007 VWF_dom

PROSITE

PROSITE ID PROSITE Term
PS51461 NC1_FIB
PS01208 VWFC_1
PS50184 VWFC_2

Pfam

Pfam ID Pfam Term
PF01410 COLFI
PF01391 Collagen
PF00093 VWC

Protein-protein interaction

Protein-miRNA interaction