Gene: GLI2

Basic information

Tag Content
Uniprot ID P10070; O60252; O60253; O60254; O60255; Q15590; Q15591; Q4JHT4;
Entrez ID 2736
Genbank protein ID BAA25666.1; BAA25668.1; BAA03568.1; BAA03569.1; BAA25665.1; AAY87165.1; BAA25667.1; AAA35898.1;
Genbank nucleotide ID NM_005270.4
Ensembl protein ID ENSP00000390436; ENSP00000354586;
Ensembl nucleotide ID ENSG00000074047
Gene name Zinc finger protein GLI2
Gene symbol GLI2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 16953426
Functional description Functions as transcription regulator in the hedgehog (Hh) pathway (PubMed:18455992, PubMed:26565916). Functions as transcriptional activator (PubMed:9557682, PubMed:19878745, PubMed:24311597). May also function as transcriptional repressor (By similarity). Requires STK36 for full transcriptional activator activity. Required for normal embryonic development (PubMed:15994174, PubMed:20685856).
Sequence
METSASATAS EKQEAKSGIL EAAGFPDPGK KASPLVVAAA AAAAVAAQGV PQHLLPPFHA 60
PLPIDMRHQE GRYHYEPHSV HGVHGPPALS GSPVISDISL IRLSPHPAGP GESPFNAPHP 120
YVNPHMEHYL RSVHSSPTLS MISAARGLSP ADVAQEHLKE RGLFGLPAPG TTPSDYYHQM 180
TLVAGHPAPY GDLLMQSGGA ASAPHLHDYL NPVDVSRFSS PRVTPRLSRK RALSISPLSD 240
ASLDLQRMIR TSPNSLVAYI NNSRSSSAAS GSYGHLSAGA LSPAFTFPHP INPVAYQQIL 300
SQQRGLGSAF GHTPPLIQPS PTFLAQQPMA LTSINATPTQ LSSSSNCLSD TNQNKQSSES 360
AVSSTVNPVA IHKRSKVKTE PEGLRPASPL ALTQGQVSGH GSCGCALPLS QEQLADLKED 420
LDRDDCKQEA EVVIYETNCH WEDCTKEYDT QEQLVHHINN EHIHGEKKEF VCRWQACTRE 480
QKPFKAQYML VVHMRRHTGE KPHKCTFEGC SKAYSRLENL KTHLRSHTGE KPYVCEHEGC 540
NKAFSNASDR AKHQNRTHSN EKPYICKIPG CTKRYTDPSS LRKHVKTVHG PDAHVTKKQR 600
NDVHLRTPLL KENGDSEAGT EPGGPESTEA SSTSQAVEDC LHVRAIKTES SGLCQSSPGA 660
QSSCSSEPSP LGSAPNNDSG VEMPGTGPGS LGDLTALDDT PPGADTSALA APSAGGLQLR 720
KHMTTMHRFE QLKKEKLKSL KDSCSWAGPT PHTRNTKLPP LPGSGSILEN FSGSGGGGPA 780
GLLPNPRLSE LSASEVTMLS QLQERRDSST STVSSAYTVS RRSSGISPYF SSRRSSEASP 840
LGAGRPHNAS SADSYDPIST DASRRSSEAS QCSGGSGLLN LTPAQQYSLR AKYAAATGGP 900
PPTPLPGLER MSLRTRLALL DAPERTLPAG CPRPLGPRRG SDGPTYGHGH AGAAPAFPHE 960
APGGGARRAS DPVRRPDALS LPRVQRFHST HNVNPGPLPP CADRRGLRLQ SHPSTDGGLA 1020
RGAYSPRPPS ISENVAMEAV AAGVDGAGPE ADLGLPEDDL VLPDDVVQYI KAHASGALDE 1080
GTGQVYPTES TGFSDNPRLP SPGLHGQRRM VAADSNVGPS APMLGGCQLG FGAPSSLNKN 1140
NMPVQWNEVS SGTVDALASQ VKPPPFPQGN LAVVQQKPAF GQYPGYSPQG LQASPGGLDS 1200
TQPHLQPRSG APSQGIPRVN YMQQLRQPVA GSQCPGMTTT MSPHACYGQV HPQLSPSTIS 1260
GALNQFPQSC SNMPAKPGHL GHPQQTEVAP DPTTMGNRHR ELGVPDSALA GVPPPHPVQS 1320
YPQQSHHLAA SMSQEGYHQV PSLLPARQPG FMEPQTGPMG VATAGFGLVQ PRPPLEPSPT 1380
GRHRGVRAVQ QQLAYARATG HAMAAMPSSQ ETAEAVPKGA MGNMGSVPPQ PPPQDAGGAP 1440
DHSMLYYYGQ IHMYEQDGGL ENLGSCQVMR SQPPQPQACQ DSIQPQPLPS PGVNQVSSTV 1500
DSQLLEAPQI DFDAIMDDGD HSSLFSGALS PSLLHSLSQN SSRLTTPRNS LTLPSIPAGI 1560
SNMAVGDMSS MLTSLAEESK FLNMMT 1586

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologGLI2102178402A0A452F0Y2Capra hircusPredictionMore>>
1:1 orthologGLI22736P10070Homo sapiensPublicationMore>>
1:1 orthologGli214633Q0VGT2CPOE11.5, E13.0, E14.5Mus musculusPublicationMore>>
1:1 orthologGLI2A0A2I3SWC0Pan troglodytesPredictionMore>>
1:1 orthologGLI2100520334F1RXX4Sus scrofaPredictionMore>>
1:1 orthologGLI2G1SDR5Oryctolagus cuniculusPredictionMore>>
1:1 orthologGli2304729F1M2B7Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
GLI2c.2125del; p.Leu709Trpfs*15 (heterozygous)targeted NGS custom gene panel and Sanger sequencing30583238
GLI2c.2684C>T; p.Ala895Val; c.4350G>T; p.Gln1450His; and c.4622C>A; p.Ser1541Tyr (triple compound heterozygous)WES and Sanger sequencing31386309

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA bindingIEA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIEA
GO:0003700 DNA-binding transcription factor activityIDA
GO:0005515 protein bindingIPI
GO:0008134 transcription factor bindingIPI
GO:0008270 zinc ion bindingIDA
GO:0043565 sequence-specific DNA bindingIDA
GO:1990841 promoter-specific chromatin bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIMP
GO:0001501 skeletal system developmentISS
GO:0001701 in utero embryonic developmentIEA
GO:0001822 kidney developmentISS
GO:0002062 chondrocyte differentiationIEA
GO:0002076 osteoblast developmentISS
GO:0007224 smoothened signaling pathwayIDA
GO:0007389 pattern specification processISS
GO:0007411 axon guidanceISS
GO:0007418 ventral midline developmentISS
GO:0007442 hindgut morphogenesisISS
GO:0007507 heart developmentISS
GO:0009952 anterior/posterior pattern specificationIEA
GO:0009954 proximal/distal pattern formationISS
GO:0021508 floor plate formationISS
GO:0021513 spinal cord dorsal/ventral patterningISS
GO:0021517 ventral spinal cord developmentISS
GO:0021696 cerebellar cortex morphogenesisISS
GO:0021775 smoothened signaling pathway involved in ventral spinal cord interneuron specificationISS
GO:0021776 smoothened signaling pathway involved in spinal cord motor neuron cell fate specificationIEA
GO:0021938 smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferationIEA
GO:0021965 spinal cord ventral commissure morphogenesisISS
GO:0021983 pituitary gland developmentISS
GO:0030324 lung developmentISS
GO:0030879 mammary gland developmentISS
GO:0030902 hindbrain developmentISS
GO:0031069 hair follicle morphogenesisIMP
GO:0032331 negative regulation of chondrocyte differentiationIEA
GO:0033089 positive regulation of T cell differentiation in thymusISS
GO:0035295 tube developmentISS
GO:0042475 odontogenesis of dentin-containing toothISS
GO:0042733 embryonic digit morphogenesisIEA
GO:0043066 negative regulation of apoptotic processIEA
GO:0045666 positive regulation of neuron differentiationIEA
GO:0045740 positive regulation of DNA replicationIDA
GO:0045879 negative regulation of smoothened signaling pathwayIEA
GO:0045893 positive regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIDA
GO:0048566 embryonic digestive tract developmentISS
GO:0048589 developmental growthISS
GO:0048666 neuron developmentISS
GO:0048754 branching morphogenesis of an epithelial tubeISS
GO:0060032 notochord regressionIEA
GO:0060513 prostatic bud formationIEA
GO:0060603 mammary gland duct morphogenesisIEA
GO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterningIEA
GO:0071407 cellular response to organic cyclic compoundIEA
GO:0090103 cochlea morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005730 nucleolusIDA
GO:0005829 cytosolTAS
GO:0005929 ciliumISS
GO:0005930 axonemeIEA
GO:0016020 membraneIEA
GO:0016607 nuclear speckIEA
GO:0031514 motile ciliumIEA
GO:0097542 ciliary tipTAS
GO:0097546 ciliary baseTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-212436 Generic Transcription PathwayIEA
R-HSA-5358351 Signaling by HedgehogTAS
R-HSA-5358351 Signaling by HedgehogIEA
R-HSA-5610783 Degradation of GLI2 by the proteasomeIEA
R-HSA-5610787 Hedgehog 'off' stateIEA
R-HSA-5610787 Hedgehog 'off' stateTAS
R-HSA-5632684 Hedgehog 'on' stateTAS
R-HSA-5635851 GLI proteins bind promoters of Hh responsive genes to promote transcriptionTAS
R-HSA-73857 RNA Polymerase II TranscriptionIEA
R-HSA-74160 Gene expression (Transcription)IEA
R-HSA-8878166 Transcriptional regulation by RUNX2IEA
R-HSA-8941284 RUNX2 regulates chondrocyte maturationIEA
R-HSA-8941326 RUNX2 regulates bone developmentIEA

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0007 Acetylation
KW-0010 Activator
KW-0025 Alternative splicing
KW-0966 Cell projection
KW-0969 Cilium
KW-0963 Cytoplasm
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0370 Holoprosencephaly
KW-1017 Isopeptide bond
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0677 Repeat
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR043359 GLI-like
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

PROSITE

PROSITE ID PROSITE Term
PS00028 ZINC_FINGER_C2H2_1
PS50157 ZINC_FINGER_C2H2_2

Pfam

Pfam ID Pfam Term
PF00096 zf-C2H2

Protein-protein interaction

Protein-miRNA interaction