Gene: PTPRF

Basic information

Tag Content
Uniprot ID P10586; D3DPX6; D3DPX7; Q5T021; Q5T022; Q5W9G2; Q86WS0;
Entrez ID 5792
Genbank protein ID EAX07087.1; BAD66835.1; EAX07089.1; AAH48768.1; CAA68754.1; EAX07086.1; EAX07088.1;
Genbank nucleotide ID NM_002840.4; NM_130440.3;
Ensembl protein ID ENSP00000398822; ENSP00000353030;
Ensembl nucleotide ID ENSG00000142949
Gene name Receptor-type tyrosine-protein phosphatase F
Gene symbol PTPRF
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Possible cell adhesion receptor. It possesses an intrinsic protein tyrosine phosphatase activity (PTPase) and dephosphorylates EPHA2 regulating its activity.
Sequence
MAPEPAPGRT MVPLVPALVM LGLVAGAHGD SKPVFIKVPE DQTGLSGGVA SFVCQATGEP 60
KPRITWMKKG KKVSSQRFEV IEFDDGAGSV LRIQPLRVQR DEAIYECTAT NSLGEINTSA 120
KLSVLEEEQL PPGFPSIDMG PQLKVVEKAR TATMLCAAGG NPDPEISWFK DFLPVDPATS 180
NGRIKQLRSG ALQIESSEES DQGKYECVAT NSAGTRYSAP ANLYVRVRRV APRFSIPPSS 240
QEVMPGGSVN LTCVAVGAPM PYVKWMMGAE ELTKEDEMPV GRNVLELSNV VRSANYTCVA 300
ISSLGMIEAT AQVTVKALPK PPIDLVVTET TATSVTLTWD SGNSEPVTYY GIQYRAAGTE 360
GPFQEVDGVA TTRYSIGGLS PFSEYAFRVL AVNSIGRGPP SEAVRARTGE QAPSSPPRRV 420
QARMLSASTM LVQWEPPEEP NGLVRGYRVY YTPDSRRPPN AWHKHNTDAG LLTTVGSLLP 480
GITYSLRVLA FTAVGDGPPS PTIQVKTQQG VPAQPADFQA EVESDTRIQL SWLLPPQERI 540
IMYELVYWAA EDEDQQHKVT FDPTSSYTLE DLKPDTLYRF QLAARSDMGV GVFTPTIEAR 600
TAQSTPSAPP QKVMCVSMGS TTVRVSWVPP PADSRNGVIT QYSVAYEAVD GEDRGRHVVD 660
GISREHSSWD LVGLEKWTEY RVWVRAHTDV GPGPESSPVL VRTDEDVPSG PPRKVEVEPL 720
NSTAVHVYWK LPVPSKQHGQ IRGYQVTYVR LENGEPRGLP IIQDVMLAEA QWRPEESEDY 780
ETTISGLTPE TTYSVTVAAY TTKGDGARSK PKIVTTTGAV PGRPTMMIST TAMNTALLQW 840
HPPKELPGEL LGYRLQYCRA DEARPNTIDF GKDDQHFTVT GLHKGTTYIF RLAAKNRAGL 900
GEEFEKEIRT PEDLPSGFPQ NLHVTGLTTS TTELAWDPPV LAERNGRIIS YTVVFRDINS 960
QQELQNITTD TRFTLTGLKP DTTYDIKVRA WTSKGSGPLS PSIQSRTMPV EQVFAKNFRV 1020
AAAMKTSVLL SWEVPDSYKS AVPFKILYNG QSVEVDGHSM RKLIADLQPN TEYSFVLMNR 1080
GSSAGGLQHL VSIRTAPDLL PHKPLPASAY IEDGRFDLSM PHVQDPSLVR WFYIVVVPID 1140
RVGGSMLTPR WSTPEELELD ELLEAIEQGG EEQRRRRRQA ERLKPYVAAQ LDVLPETFTL 1200
GDKKNYRGFY NRPLSPDLSY QCFVLASLKE PMDQKRYASS PYSDEIVVQV TPAQQQEEPE 1260
MLWVTGPVLA VILIILIVIA ILLFKRKRTH SPSSKDEQSI GLKDSLLAHS SDPVEMRRLN 1320
YQTPGMRDHP PIPITDLADN IERLKANDGL KFSQEYESID PGQQFTWENS NLEVNKPKNR 1380
YANVIAYDHS RVILTSIDGV PGSDYINANY IDGYRKQNAY IATQGPLPET MGDFWRMVWE 1440
QRTATVVMMT RLEEKSRVKC DQYWPARGTE TCGLIQVTLL DTVELATYTV RTFALHKSGS 1500
SEKRELRQFQ FMAWPDHGVP EYPTPILAFL RRVKACNPLD AGPMVVHCSA GVGRTGCFIV 1560
IDAMLERMKH EKTVDIYGHV TCMRSQRNYM VQTEDQYVFI HEALLEAATC GHTEVPARNL 1620
YAHIQKLGQV PPGESVTAME LEFKLLASSK AHTSRFISAN LPCNKFKNRL VNIMPYELTR 1680
VCLQPIRGVE GSDYINASFL DGYRQQKAYI ATQGPLAEST EDFWRMLWEH NSTIIVMLTK 1740
LREMGREKCH QYWPAERSAR YQYFVVDPMA EYNMPQYILR EFKVTDARDG QSRTIRQFQF 1800
TDWPEQGVPK TGEGFIDFIG QVHKTKEQFG QDGPITVHCS AGVGRTGVFI TLSIVLERMR 1860
YEGVVDMFQT VKTLRTQRPA MVQTEDQYQL CYRAALEYLG SFDHYAT 1907

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPTPRF512072A7MBJ4Bos taurusPredictionMore>>
1:1 orthologPTPRFA0A452EN77Capra hircusPredictionMore>>
1:1 orthologPTPRF5792P10586Homo sapiensPredictionMore>>
1:1 orthologPtprf19268A2A8L5CPOMus musculusPublicationMore>>
1:1 orthologPTPRF456828K7D8P0Pan troglodytesPredictionMore>>
1:1 orthologA0A480JVC3Sus scrofaPredictionMore>>
1:1 orthologPtprfA0A0G2JT62Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004725 protein tyrosine phosphatase activityIDA
GO:0004725 protein tyrosine phosphatase activityIBA
GO:0004725 protein tyrosine phosphatase activityIMP
GO:0005001 transmembrane receptor protein tyrosine phosphatase activityTAS
GO:0008201 heparin bindingIEA
GO:0035373 chondroitin sulfate proteoglycan bindingIEA
GO:0044877 protein-containing complex bindingIEA
GO:0050839 cell adhesion molecule bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0006470 protein dephosphorylationIBA
GO:0007155 cell adhesionTAS
GO:0007185 transmembrane receptor protein tyrosine phosphatase signaling pathwayTAS
GO:0016477 cell migrationIMP
GO:0031102 neuron projection regenerationIEA
GO:0035335 peptidyl-tyrosine dephosphorylationIBA
GO:0035335 peptidyl-tyrosine dephosphorylationIMP
GO:0048679 regulation of axon regenerationIEA
GO:0099560 synaptic membrane adhesionIBA
GO:0099560 synaptic membrane adhesionIDA
GO:0099560 synaptic membrane adhesionIMP
GO:1900121 negative regulation of receptor bindingIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneTAS
GO:0043005 neuron projectionIEA
GO:0043025 neuronal cell bodyIEA
GO:0070062 extracellular exosomeHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-112316 Neuronal SystemTAS
R-HSA-388844 Receptor-type tyrosine-protein phosphatasesTAS
R-HSA-6794362 Protein-protein interactions at synapsesTAS
R-HSA-8849932 Synaptic adhesion-like moleculesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0130 Cell adhesion
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0358 Heparin-binding
KW-0378 Hydrolase
KW-0393 Immunoglobulin domain
KW-0472 Membrane
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0904 Protein phosphatase
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR013098 Ig_I-set
IPR003599 Ig_sub
IPR003598 Ig_sub2
IPR029021 Prot-tyrosine_phosphatase-like
IPR000242 PTPase_domain
IPR016130 Tyr_Pase_AS
IPR003595 Tyr_Pase_cat
IPR000387 TYR_PHOSPHATASE_dom

PROSITE

PROSITE ID PROSITE Term
PS50853 FN3
PS50835 IG_LIKE
PS00383 TYR_PHOSPHATASE_1
PS50056 TYR_PHOSPHATASE_2
PS50055 TYR_PHOSPHATASE_PTP

Pfam

Pfam ID Pfam Term
PF00041 fn3
PF07679 I-set
PF00102 Y_phosphatase

Protein-protein interaction

Protein-miRNA interaction