Gene: TGFB3

Basic information

Tag Content
Uniprot ID P10600; Q8WV88;
Entrez ID 7043
Genbank protein ID CAA33024.1; AAO13495.1; AAH18503.1; AAM96819.1; AAA61161.1; CAA32362.1; AAP35951.1; AAC79727.1;
Genbank nucleotide ID NM_003239.4; NM_001329939.1; NM_001329938.1;
Ensembl protein ID ENSP00000238682; ENSP00000451110;
Ensembl nucleotide ID ENSG00000119699
Gene name Transforming growth factor beta-3 proprotein
Gene symbol TGFB3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 11396489; 18480962; 22143699; 20082468; 9683588; 14659070; 20170386; 16247549; 23023602;
Functional description Transforming growth factor beta-3 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-3 (TGF-beta-3) chains, which constitute the regulatory and active subunit of TGF-beta-3, respectively.
Sequence
MKMHLQRALV VLALLNFATV SLSLSTCTTL DFGHIKKKRV EAIRGQILSK LRLTSPPEPT 60
VMTHVPYQVL ALYNSTRELL EEMHGEREEG CTQENTESEY YAKEIHKFDM IQGLAEHNEL 120
AVCPKGITSK VFRFNVSSVE KNRTNLFRAE FRVLRVPNPS SKRNEQRIEL FQILRPDEHI 180
AKQRYIGGKN LPTRGTAEWL SFDVTDTVRE WLLRRESNLG LEISIHCPCH TFQPNGDILE 240
NIHEVMEIKF KGVDNEDDHG RGDLGRLKKQ KDHHNPHLIL MMIPPHRLDN PGQGGQRKKR 300
ALDTNYCFRN LEENCCVRPL YIDFRQDLGW KWVHEPKGYY ANFCSGPCPY LRSADTTHST 360
VLGLYNTLNP EASASPCCVP QDLEPLTILY YVGRTPKVEQ LSNMVVKSCK CS 412

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologTGFB3538957A6QP91Bos taurusPredictionMore>>
1:1 orthologTGFB3490796F1PR85Canis lupus familiarisPredictionMore>>
1:1 orthologTGFB3102189962A0A452DMZ7Capra hircusPredictionMore>>
1:1 orthologTGFB37043P10600CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologTgfb3P17125CPOE11.5, E12.5, E14.0, E13.5, E14.5, E15.5Mus musculusPublicationMore>>
1:1 orthologTGFB3453054H2Q8N5Pan troglodytesPredictionMore>>
1:1 orthologTGFB3397400K7GSJ9Sus scrofaPredictionMore>>
1:1 orthologTgfb325717Q07258Rattus norvegicusPredictionMore>>
1:1 orthologtgfb3369195Q66I23Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
TGFB3IVS5+104A>GPCR-RFLP23023602
TGFB3rs3917201G>APCR-RFLP; TDT20170386
TGFB3rs2300607A>T; IVS1+5321PCR-RFLP; TDT18480962
TGFB3IVS5+104A>GGenotyping14659070
TGFB3g.-1083_-1086AGAGGG repeat (5'UTR.1)Genotyping; sequencing; TDT23660777
TGFB3g.-24 int4/ex5 T>C (X5.1); Genotyping; sequencing; TDT23660777
TGFB3rs2205181T>CGenotyping20572854
TGFB3rs8011635C>TGenotyping20572854

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005114 type II transforming growth factor beta receptor bindingIDA
GO:0005114 type II transforming growth factor beta receptor bindingIPI
GO:0005114 type II transforming growth factor beta receptor bindingIBA
GO:0005114 type II transforming growth factor beta receptor bindingIMP
GO:0005125 cytokine activityIBA
GO:0005515 protein bindingIPI
GO:0008083 growth factor activityIEA
GO:0034713 type I transforming growth factor beta receptor bindingIDA
GO:0034714 type III transforming growth factor beta receptor bindingIBA
GO:0034714 type III transforming growth factor beta receptor bindingIMP
GO:0042802 identical protein bindingIDA
GO:0042802 identical protein bindingIPI
GO:0044877 protein-containing complex bindingIEA
GO:0050431 transforming growth factor beta bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000187 activation of MAPK activityIEA
GO:0001666 response to hypoxiaIDA
GO:0001701 in utero embryonic developmentISS
GO:0002576 platelet degranulationTAS
GO:0007179 transforming growth factor beta receptor signaling pathwayIDA
GO:0007179 transforming growth factor beta receptor signaling pathwayIBA
GO:0007435 salivary gland morphogenesisIEP
GO:0007565 female pregnancyIEA
GO:0007568 agingIEA
GO:0008284 positive regulation of cell population proliferationIMP
GO:0008285 negative regulation of cell population proliferationISS
GO:0008285 negative regulation of cell population proliferationIMP
GO:0010718 positive regulation of epithelial to mesenchymal transitionISS
GO:0010718 positive regulation of epithelial to mesenchymal transitionIDA
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylationISS
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylationIBA
GO:0010936 negative regulation of macrophage cytokine productionIDA
GO:0030501 positive regulation of bone mineralizationIEP
GO:0030509 BMP signaling pathwayIBA
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathwayIEA
GO:0030879 mammary gland developmentISS
GO:0032570 response to progesteroneIDA
GO:0032967 positive regulation of collagen biosynthetic processIMP
GO:0034616 response to laminar fluid shear stressIEA
GO:0042060 wound healingIEA
GO:0042127 regulation of cell population proliferationIBA
GO:0042476 odontogenesisNAS
GO:0042704 uterine wall breakdownTAS
GO:0043065 positive regulation of apoptotic processISS
GO:0043524 negative regulation of neuron apoptotic processISS
GO:0043627 response to estrogenIEA
GO:0043932 ossification involved in bone remodelingIEP
GO:0045216 cell-cell junction organizationIDA
GO:0045893 positive regulation of transcription, DNA-templatedISS
GO:0045893 positive regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIISS
GO:0048286 lung alveolus developmentISS
GO:0048565 digestive tract developmentIEA
GO:0048702 embryonic neurocranium morphogenesisIEA
GO:0048839 inner ear developmentIEA
GO:0050714 positive regulation of protein secretionIDA
GO:0051491 positive regulation of filopodium assemblyISS
GO:0051496 positive regulation of stress fiber assemblyIDA
GO:0051781 positive regulation of cell divisionIEA
GO:0060325 face morphogenesisIMP
GO:0060364 frontal suture morphogenesisIEA
GO:0060391 positive regulation of SMAD protein signal transductionISS
GO:0060395 SMAD protein signal transductionIBA
GO:0062009 secondary palate developmentISS
GO:0070483 detection of hypoxiaIDA
GO:1904706 negative regulation of vascular smooth muscle cell proliferationIDA
GO:1905075 positive regulation of tight junction disassemblyIDA
GO:1905005 regulation of epithelial to mesenchymal transition involved in endocardial cushion formationISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005615 extracellular spaceIBA
GO:0005634 nucleusIEA
GO:0005886 plasma membraneIC
GO:0009986 cell surfaceIEA
GO:0030315 T-tubuleIEA
GO:0031093 platelet alpha granule lumenTAS
GO:0043025 neuronal cell bodyIEA
GO:0043231 intracellular membrane-bounded organelleIDA
GO:0062023 collagen-containing extracellular matrixIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-109582 HemostasisTAS
R-HSA-114608 Platelet degranulation TAS
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-1566948 Elastic fibre formationTAS
R-HSA-2129379 Molecules associated with elastic fibresTAS
R-HSA-3000178 ECM proteoglycansIEA
R-HSA-76002 Platelet activation, signaling and aggregationTAS
R-HSA-76005 Response to elevated platelet cytosolic Ca2+TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0122 Cardiomyopathy
KW-0165 Cleavage on pair of basic residues
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0339 Growth factor
KW-0488 Methylation
KW-0497 Mitogen
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR029034 Cystine-knot_cytokine
IPR001839 TGF-b_C
IPR001111 TGF-b_propeptide
IPR016319 TGF-beta
IPR015615 TGF-beta-rel
IPR015618 TGFB3
IPR017948 TGFb_CS

PROSITE

PROSITE ID PROSITE Term
PS00250 TGF_BETA_1
PS51362 TGF_BETA_2

Pfam

Pfam ID Pfam Term
PF00019 TGF_beta
PF00688 TGFb_propeptide

Protein-protein interaction

Protein-miRNA interaction