Gene: DMD

Basic information

Tag Content
Uniprot ID P11532; A1L0U9; E7EQR9; E7EQS5; E7ESB2; E9PDN1; E9PDN5; F5GZY3; F8VX32; Q02295; Q14169; Q14170; Q5JYU0; Q6NSJ9; Q7KZ48; Q8N754; Q9UCW3; Q9UCW4;
Entrez ID 1756
Genbank protein ID AAA53189.1; AAA52316.1; CAA31454.1; CAA31451.1; CAI42225.1; CAA29544.1; AAH94758.1; CAI42991.1; AAH70078.1; CAA33245.1; AAH28720.1; CAA32479.1; CAA29545.1; AAI27104.2; AAA86115.1; CAA31452.1; CAI42229.1; EAW99065.1; CAI43058.1; CAA33518.1; CAI39566.1; AAA86116.1; CAA31453.1; CAA38589.1; CAI42950.1;
Genbank nucleotide ID NM_004015.2; NM_004019.2; NM_004021.2; NM_004016.2; NM_004014.2; NM_004020.3; NM_004010.3; NM_004018.2; NM_004009.3; NM_004022.2; NM_004023.2; NM_000109.3; NM_004012.3; NM_004017.2; NM_004006.2; NM_004011.3; NM_004013.2;
Ensembl protein ID ENSP00000354464; ENSP00000367974; ENSP00000367997; ENSP00000367951;
Ensembl nucleotide ID ENSG00000198947
Gene name Dystrophin
Gene symbol DMD
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CL/P
Developmental stage
Data sources Manually collected
Reference 26331285
Functional description Anchors the extracellular matrix to the cytoskeleton via F-actin. Ligand for dystroglycan. Component of the dystrophin-associated glycoprotein complex which accumulates at the neuromuscular junction (NMJ) and at a variety of synapses in the peripheral and central nervous systems and has a structural function in stabilizing the sarcolemma. Also implicated in signaling events and synaptic transmission.
Sequence
MLWWEEVEDC YEREDVQKKT FTKWVNAQFS KFGKQHIENL FSDLQDGRRL LDLLEGLTGQ 60
KLPKEKGSTR VHALNNVNKA LRVLQNNNVD LVNIGSTDIV DGNHKLTLGL IWNIILHWQV 120
KNVMKNIMAG LQQTNSEKIL LSWVRQSTRN YPQVNVINFT TSWSDGLALN ALIHSHRPDL 180
FDWNSVVCQQ SATQRLEHAF NIARYQLGIE KLLDPEDVDT TYPDKKSILM YITSLFQVLP 240
QQVSIEAIQE VEMLPRPPKV TKEEHFQLHH QMHYSQQITV SLAQGYERTS SPKPRFKSYA 300
YTQAAYVTTS DPTRSPFPSQ HLEAPEDKSF GSSLMESEVN LDRYQTALEE VLSWLLSAED 360
TLQAQGEISN DVEVVKDQFH THEGYMMDLT AHQGRVGNIL QLGSKLIGTG KLSEDEETEV 420
QEQMNLLNSR WECLRVASME KQSNLHRVLM DLQNQKLKEL NDWLTKTEER TRKMEEEPLG 480
PDLEDLKRQV QQHKVLQEDL EQEQVRVNSL THMVVVVDES SGDHATAALE EQLKVLGDRW 540
ANICRWTEDR WVLLQDILLK WQRLTEEQCL FSAWLSEKED AVNKIHTTGF KDQNEMLSSL 600
QKLAVLKADL EKKKQSMGKL YSLKQDLLST LKNKSVTQKT EAWLDNFARC WDNLVQKLEK 660
STAQISQAVT TTQPSLTQTT VMETVTTVTT REQILVKHAQ EELPPPPPQK KRQITVDSEI 720
RKRLDVDITE LHSWITRSEA VLQSPEFAIF RKEGNFSDLK EKVNAIEREK AEKFRKLQDA 780
SRSAQALVEQ MVNEGVNADS IKQASEQLNS RWIEFCQLLS ERLNWLEYQN NIIAFYNQLQ 840
QLEQMTTTAE NWLKIQPTTP SEPTAIKSQL KICKDEVNRL SDLQPQIERL KIQSIALKEK 900
GQGPMFLDAD FVAFTNHFKQ VFSDVQAREK ELQTIFDTLP PMRYQETMSA IRTWVQQSET 960
KLSIPQLSVT DYEIMEQRLG ELQALQSSLQ EQQSGLYYLS TTVKEMSKKA PSEISRKYQS 1020
EFEEIEGRWK KLSSQLVEHC QKLEEQMNKL RKIQNHIQTL KKWMAEVDVF LKEEWPALGD 1080
SEILKKQLKQ CRLLVSDIQT IQPSLNSVNE GGQKIKNEAE PEFASRLETE LKELNTQWDH 1140
MCQQVYARKE ALKGGLEKTV SLQKDLSEMH EWMTQAEEEY LERDFEYKTP DELQKAVEEM 1200
KRAKEEAQQK EAKVKLLTES VNSVIAQAPP VAQEALKKEL ETLTTNYQWL CTRLNGKCKT 1260
LEEVWACWHE LLSYLEKANK WLNEVEFKLK TTENIPGGAE EISEVLDSLE NLMRHSEDNP 1320
NQIRILAQTL TDGGVMDELI NEELETFNSR WRELHEEAVR RQKLLEQSIQ SAQETEKSLH 1380
LIQESLTFID KQLAAYIADK VDAAQMPQEA QKIQSDLTSH EISLEEMKKH NQGKEAAQRV 1440
LSQIDVAQKK LQDVSMKFRL FQKPANFEQR LQESKMILDE VKMHLPALET KSVEQEVVQS 1500
QLNHCVNLYK SLSEVKSEVE MVIKTGRQIV QKKQTENPKE LDERVTALKL HYNELGAKVT 1560
ERKQQLEKCL KLSRKMRKEM NVLTEWLAAT DMELTKRSAV EGMPSNLDSE VAWGKATQKE 1620
IEKQKVHLKS ITEVGEALKT VLGKKETLVE DKLSLLNSNW IAVTSRAEEW LNLLLEYQKH 1680
METFDQNVDH ITKWIIQADT LLDESEKKKP QQKEDVLKRL KAELNDIRPK VDSTRDQAAN 1740
LMANRGDHCR KLVEPQISEL NHRFAAISHR IKTGKASIPL KELEQFNSDI QKLLEPLEAE 1800
IQQGVNLKEE DFNKDMNEDN EGTVKELLQR GDNLQQRITD ERKREEIKIK QQLLQTKHNA 1860
LKDLRSQRRK KALEISHQWY QYKRQADDLL KCLDDIEKKL ASLPEPRDER KIKEIDRELQ 1920
KKKEELNAVR RQAEGLSEDG AAMAVEPTQI QLSKRWREIE SKFAQFRRLN FAQIHTVREE 1980
TMMVMTEDMP LEISYVPSTY LTEITHVSQA LLEVEQLLNA PDLCAKDFED LFKQEESLKN 2040
IKDSLQQSSG RIDIIHSKKT AALQSATPVE RVKLQEALSQ LDFQWEKVNK MYKDRQGRFD 2100
RSVEKWRRFH YDIKIFNQWL TEAEQFLRKT QIPENWEHAK YKWYLKELQD GIGQRQTVVR 2160
TLNATGEEII QQSSKTDASI LQEKLGSLNL RWQEVCKQLS DRKKRLEEQK NILSEFQRDL 2220
NEFVLWLEEA DNIASIPLEP GKEQQLKEKL EQVKLLVEEL PLRQGILKQL NETGGPVLVS 2280
APISPEEQDK LENKLKQTNL QWIKVSRALP EKQGEIEAQI KDLGQLEKKL EDLEEQLNHL 2340
LLWLSPIRNQ LEIYNQPNQE GPFDVKETEI AVQAKQPDVE EILSKGQHLY KEKPATQPVK 2400
RKLEDLSSEW KAVNRLLQEL RAKQPDLAPG LTTIGASPTQ TVTLVTQPVV TKETAISKLE 2460
MPSSLMLEVP ALADFNRAWT ELTDWLSLLD QVIKSQRVMV GDLEDINEMI IKQKATMQDL 2520
EQRRPQLEEL ITAAQNLKNK TSNQEARTII TDRIERIQNQ WDEVQEHLQN RRQQLNEMLK 2580
DSTQWLEAKE EAEQVLGQAR AKLESWKEGP YTVDAIQKKI TETKQLAKDL RQWQTNVDVA 2640
NDLALKLLRD YSADDTRKVH MITENINASW RSIHKRVSER EAALEETHRL LQQFPLDLEK 2700
FLAWLTEAET TANVLQDATR KERLLEDSKG VKELMKQWQD LQGEIEAHTD VYHNLDENSQ 2760
KILRSLEGSD DAVLLQRRLD NMNFKWSELR KKSLNIRSHL EASSDQWKRL HLSLQELLVW 2820
LQLKDDELSR QAPIGGDFPA VQKQNDVHRA FKRELKTKEP VIMSTLETVR IFLTEQPLEG 2880
LEKLYQEPRE LPPEERAQNV TRLLRKQAEE VNTEWEKLNL HSADWQRKID ETLERLQELQ 2940
EATDELDLKL RQAEVIKGSW QPVGDLLIDS LQDHLEKVKA LRGEIAPLKE NVSHVNDLAR 3000
QLTTLGIQLS PYNLSTLEDL NTRWKLLQVA VEDRVRQLHE AHRDFGPASQ HFLSTSVQGP 3060
WERAISPNKV PYYINHETQT TCWDHPKMTE LYQSLADLNN VRFSAYRTAM KLRRLQKALC 3120
LDLLSLSAAC DALDQHNLKQ NDQPMDILQI INCLTTIYDR LEQEHNNLVN VPLCVDMCLN 3180
WLLNVYDTGR TGRIRVLSFK TGIISLCKAH LEDKYRYLFK QVASSTGFCD QRRLGLLLHD 3240
SIQIPRQLGE VASFGGSNIE PSVRSCFQFA NNKPEIEAAL FLDWMRLEPQ SMVWLPVLHR 3300
VAAAETAKHQ AKCNICKECP IIGFRYRSLK HFNYDICQSC FFSGRVAKGH KMHYPMVEYC 3360
TPTTSGEDVR DFAKVLKNKF RTKRYFAKHP RMGYLPVQTV LEGDNMETPV TLINFWPVDS 3420
APASSPQLSH DDTHSRIEHY ASRLAEMENS NGSYLNDSIS PNESIDDEHL LIQHYCQSLN 3480
QDSPLSQPRS PAQILISLES EERGELERIL ADLEEENRNL QAEYDRLKQQ HEHKGLSPLP 3540
SPPEMMPTSP QSPRDAELIA EAKLLRQHKG RLEARMQILE DHNKQLESQL HRLRQLLEQP 3600
QAEAKVNGTT VSSPSTSLQR SDSSQPMLLR VVGSQTSDSM GEEDLLSPPQ DTSTGLEEVM 3660
EQLNNSFPSS RGRNTPGKPM REDTM 3685

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

There is no orthologous record for this gene !

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
DMDrs5928207Genotyping23489894
DMDrs5928208Genotyping23489894
DMDrs6631759Genotyping23489894
DMDrs5971698Genotyping23489894
DMDrs5928214Genotyping23489894
DMDrs5972815Genotyping23489894

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0002162 dystroglycan bindingIPI
GO:0003779 actin bindingTAS
GO:0003779 actin bindingIDA
GO:0005200 structural constituent of cytoskeletonTAS
GO:0005515 protein bindingIPI
GO:0008270 zinc ion bindingIEA
GO:0008307 structural constituent of muscleIDA
GO:0008307 structural constituent of muscleTAS
GO:0017022 myosin bindingIDA
GO:0017166 vinculin bindingIPI
GO:0050998 nitric-oxide synthase bindingISS

GO:Biological Process

GO ID GO Term Evidence
GO:0002027 regulation of heart rateIMP
GO:0007010 cytoskeleton organizationIEA
GO:0007517 muscle organ developmentNAS
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulumISS
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ionISS
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ionISS
GO:0014819 regulation of skeletal muscle contractionISS
GO:0030049 muscle filament slidingTAS
GO:0033137 negative regulation of peptidyl-serine phosphorylationISS
GO:0034613 cellular protein localizationIMP
GO:0034622 cellular protein-containing complex assemblyISS
GO:0035994 response to muscle stretchISS
GO:0043043 peptide biosynthetic processIDA
GO:0046716 muscle cell cellular homeostasisISS
GO:0048747 muscle fiber developmentISS
GO:0060048 cardiac muscle contractionIMP
GO:0060314 regulation of ryanodine-sensitive calcium-release channel activityISS
GO:0086001 cardiac muscle cell action potentialISS
GO:1901385 regulation of voltage-gated calcium channel activityISS
GO:1902083 negative regulation of peptidyl-cysteine S-nitrosylationISS
GO:2000651 positive regulation of sodium ion transmembrane transporter activityISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005623 cellIEA
GO:0005829 cytosolTAS
GO:0005856 cytoskeletonIEA
GO:0009986 cell surfaceIDA
GO:0016010 dystrophin-associated glycoprotein complexIDA
GO:0016010 dystrophin-associated glycoprotein complexNAS
GO:0016010 dystrophin-associated glycoprotein complexTAS
GO:0016013 syntrophin complexTAS
GO:0030018 Z discISS
GO:0030055 cell-substrate junctionISS
GO:0030175 filopodiumIDA
GO:0031527 filopodium membraneIDA
GO:0032991 protein-containing complexIDA
GO:0042383 sarcolemmaIDA
GO:0043034 costamereIDA
GO:0044306 neuron projection terminusISS
GO:0045121 membrane raftISS
GO:0045202 synapseISS
GO:0045211 postsynaptic membraneIEA
GO:0016328 lateral plasma membraneTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-3000171 Non-integrin membrane-ECM interactionsIEA
R-HSA-390522 Striated Muscle ContractionTAS
R-HSA-397014 Muscle contractionTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0009 Actin-binding
KW-0877 Alternative promoter usage
KW-0025 Alternative splicing
KW-0106 Calcium
KW-0122 Cardiomyopathy
KW-0965 Cell junction
KW-1003 Cell membrane
KW-0963 Cytoplasm
KW-0206 Cytoskeleton
KW-0225 Disease mutation
KW-0472 Membrane
KW-0479 Metal-binding
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0628 Postsynaptic cell membrane
KW-1185 Reference proteome
KW-0677 Repeat
KW-0770 Synapse
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR001589 Actinin_actin-bd_CS
IPR001715 CH-domain
IPR036872 CH_dom_sf
IPR035436 Dystrophin/utrophin
IPR011992 EF-hand-dom_pair
IPR015153 EF-hand_dom_typ1
IPR015154 EF-hand_dom_typ2
IPR018159 Spectrin/alpha-actinin
IPR002017 Spectrin_repeat
IPR001202 WW_dom
IPR036020 WW_dom_sf
IPR000433 Znf_ZZ
IPR043145 Znf_ZZ_sf

PROSITE

PROSITE ID PROSITE Term
PS00019 ACTININ_1
PS00020 ACTININ_2
PS50021 CH
PS01159 WW_DOMAIN_1
PS50020 WW_DOMAIN_2
PS01357 ZF_ZZ_1
PS50135 ZF_ZZ_2

Pfam

Pfam ID Pfam Term
PF00307 CH
PF09068 EF-hand_2
PF09069 EF-hand_3
PF00435 Spectrin
PF00397 WW
PF00569 ZZ

Protein-protein interaction

Protein-miRNA interaction