Gene: COL11A1

Basic information

Tag Content
Uniprot ID P12107; B1ASK7; D3DT73; E9PCU0; Q14034; Q149N0; Q9UIT4; Q9UIT5; Q9UIT6;
Entrez ID 1301
Genbank protein ID EAW72908.1; AAF04724.1; AAF04726.1; AAI17698.1; AAA79171.1; AAA51891.1; EAW72910.1; AAF04725.1;
Genbank nucleotide ID NM_080629.2; NM_080630.3; NM_001190709.1; NM_001854.3;
Ensembl protein ID ENSP00000351163; ENSP00000426533; ENSP00000359114; ENSP00000302551;
Ensembl nucleotide ID ENSG00000060718
Gene name Collagen alpha-1(XI) chain
Gene symbol COL11A1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils.
Sequence
MEPWSSRWKT KRWLWDFTVT TLALTFLFQA REVRGAAPVD VLKALDFHNS PEGISKTTGF 60
CTNRKNSKGS DTAYRVSKQA QLSAPTKQLF PGGTFPEDFS ILFTVKPKKG IQSFLLSIYN 120
EHGIQQIGVE VGRSPVFLFE DHTGKPAPED YPLFRTVNIA DGKWHRVAIS VEKKTVTMIV 180
DCKKKTTKPL DRSERAIVDT NGITVFGTRI LDEEVFEGDI QQFLITGDPK AAYDYCEHYS 240
PDCDSSAPKA AQAQEPQIDE YAPEDIIEYD YEYGEAEYKE AESVTEGPTV TEETIAQTEA 300
NIVDDFQEYN YGTMESYQTE APRHVSGTNE PNPVEEIFTE EYLTGEDYDS QRKNSEDTLY 360
ENKEIDGRDS DLLVDGDLGE YDFYEYKEYE DKPTSPPNEE FGPGVPAETD ITETSINGHG 420
AYGEKGQKGE PAVVEPGMLV EGPPGPAGPA GIMGPPGLQG PTGPPGDPGD RGPPGRPGLP 480
GADGLPGPPG TMLMLPFRYG GDGSKGPTIS AQEAQAQAIL QQARIALRGP PGPMGLTGRP 540
GPVGGPGSSG AKGESGDPGP QGPRGVQGPP GPTGKPGKRG RPGADGGRGM PGEPGAKGDR 600
GFDGLPGLPG DKGHRGERGP QGPPGPPGDD GMRGEDGEIG PRGLPGEAGP RGLLGPRGTP 660
GAPGQPGMAG VDGPPGPKGN MGPQGEPGPP GQQGNPGPQG LPGPQGPIGP PGEKGPQGKP 720
GLAGLPGADG PPGHPGKEGQ SGEKGALGPP GPQGPIGYPG PRGVKGADGV RGLKGSKGEK 780
GEDGFPGFKG DMGLKGDRGE VGQIGPRGED GPEGPKGRAG PTGDPGPSGQ AGEKGKLGVP 840
GLPGYPGRQG PKGSTGFPGF PGANGEKGAR GVAGKPGPRG QRGPTGPRGS RGARGPTGKP 900
GPKGTSGGDG PPGPPGERGP QGPQGPVGFP GPKGPPGPPG KDGLPGHPGQ RGETGFQGKT 960
GPPGPGGVVG PQGPTGETGP IGERGHPGPP GPPGEQGLPG AAGKEGAKGD PGPQGISGKD 1020
GPAGLRGFPG ERGLPGAQGA PGLKGGEGPQ GPPGPVGSPG ERGSAGTAGP IGLPGRPGPQ 1080
GPPGPAGEKG APGEKGPQGP AGRDGVQGPV GLPGPAGPAG SPGEDGDKGE IGEPGQKGSK 1140
GDKGENGPPG PPGLQGPVGA PGIAGGDGEP GPRGQQGMFG QKGDEGARGF PGPPGPIGLQ 1200
GLPGPPGEKG ENGDVGPMGP PGPPGPRGPQ GPNGADGPQG PPGSVGSVGG VGEKGEPGEA 1260
GNPGPPGEAG VGGPKGERGE KGEAGPPGAA GPPGAKGPPG DDGPKGNPGP VGFPGDPGPP 1320
GEPGPAGQDG VGGDKGEDGD PGQPGPPGPS GEAGPPGPPG KRGPPGAAGA EGRQGEKGAK 1380
GEAGAEGPPG KTGPVGPQGP AGKPGPEGLR GIPGPVGEQG LPGAAGQDGP PGPMGPPGLP 1440
GLKGDPGSKG EKGHPGLIGL IGPPGEQGEK GDRGLPGTQG SPGAKGDGGI PGPAGPLGPP 1500
GPPGLPGPQG PKGNKGSTGP AGQKGDSGLP GPPGSPGPPG EVIQPLPILS SKKTRRHTEG 1560
MQADADDNIL DYSDGMEEIF GSLNSLKQDI EHMKFPMGTQ TNPARTCKDL QLSHPDFPDG 1620
EYWIDPNQGC SGDSFKVYCN FTSGGETCIY PDKKSEGVRI SSWPKEKPGS WFSEFKRGKL 1680
LSYLDVEGNS INMVQMTFLK LLTASARQNF TYHCHQSAAW YDVSSGSYDK ALRFLGSNDE 1740
EMSYDNNPFI KTLYDGCASR KGYEKTVIEI NTPKIDQVPI VDVMINDFGD QNQKFGFEVG 1800
PVCFLG 1806

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCOL11A1100685969J9NYK4Canis lupus familiarisPredictionMore>>
1:1 orthologCOL11A1A0A452ECM1Capra hircusPredictionMore>>
1:1 orthologCOL11A11301P12107Homo sapiensPredictionMore>>
1:1 orthologCol11a112814Q61245CPOE14.5Mus musculusPublicationMore>>
1:1 orthologCOL11A1A0A2I3RPT1Pan troglodytesPredictionMore>>
1:1 orthologCOL11A1100349413G1T5B6Oryctolagus cuniculusPredictionMore>>
1:1 orthologCol11a125654P20909Rattus norvegicusPredictionMore>>
1:1 orthologcol11a1a565402A2RUX5Danio rerioPredictionMore>>

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005201 extracellular matrix structural constituentNAS
GO:0005201 extracellular matrix structural constituentIBA
GO:0008201 heparin bindingIEA
GO:0030020 extracellular matrix structural constituent conferring tensile strengthRCA
GO:0030674 protein binding, bridgingNAS
GO:0046872 metal ion bindingIEA
GO:0050840 extracellular matrix bindingNAS
GO:1904399 heparan sulfate bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0001502 cartilage condensationIEA
GO:0001503 ossificationIEA
GO:0002063 chondrocyte developmentIEA
GO:0006029 proteoglycan metabolic processIEA
GO:0007601 visual perceptionIMP
GO:0007605 sensory perception of soundIMP
GO:0030198 extracellular matrix organizationNAS
GO:0030198 extracellular matrix organizationIBA
GO:0030199 collagen fibril organizationNAS
GO:0035987 endodermal cell differentiationIEP
GO:0035989 tendon developmentIEA
GO:0042472 inner ear morphogenesisIEA
GO:0048704 embryonic skeletal system morphogenesisIEA
GO:0050910 detection of mechanical stimulus involved in sensory perception of soundIMP
GO:0055010 ventricular cardiac muscle tissue morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005592 collagen type XI trimerNAS
GO:0005592 collagen type XI trimerIBA
GO:0005592 collagen type XI trimerIDA
GO:0005615 extracellular spaceIBA
GO:0005788 endoplasmic reticulum lumenTAS
GO:0031012 extracellular matrixIBA
GO:0062023 collagen-containing extracellular matrixHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1442490 Collagen degradationIEA
R-HSA-1442490 Collagen degradationTAS
R-HSA-1474228 Degradation of the extracellular matrixIEA
R-HSA-1474228 Degradation of the extracellular matrixTAS
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474290 Collagen formationTAS
R-HSA-162582 Signal TransductionTAS
R-HSA-1650814 Collagen biosynthesis and modifying enzymesTAS
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structuresTAS
R-HSA-3000171 Non-integrin membrane-ECM interactionsTAS
R-HSA-6806834 Signaling by METTAS
R-HSA-8874081 MET activates PTK2 signalingTAS
R-HSA-8875878 MET promotes cell motilityTAS
R-HSA-8948216 Collagen chain trimerizationTAS
R-HSA-9006934 Signaling by Receptor Tyrosine KinasesTAS

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0106 Calcium
KW-0898 Cataract
KW-0176 Collagen
KW-0209 Deafness
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0242 Dwarfism
KW-0038 Ectodermal dysplasia
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0379 Hydroxylation
KW-0479 Metal-binding
KW-1010 Non-syndromic deafness
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal
KW-0757 Stickler syndrome

Interpro

InterPro ID InterPro Term
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR000885 Fib_collagen_C
IPR001791 Laminin_G

PROSITE

PROSITE ID PROSITE Term
PS51461 NC1_FIB

Pfam

Pfam ID Pfam Term
PF01410 COLFI
PF01391 Collagen
PF02210 Laminin_G_2

Protein-protein interaction

Protein-miRNA interaction