Gene: BMP4

Basic information

Tag Content
Uniprot ID P12644; Q9UM80;
Entrez ID 652
Genbank protein ID AAH20546.1; BAA06410.1; AAC72278.1; AAA51835.1;
Genbank nucleotide ID NM_001347916.1; NM_130851.3; NM_130850.4; NM_001202.5; NM_001347914.1;
Ensembl protein ID ENSP00000454134; ENSP00000394165; ENSP00000245451; ENSP00000453485;
Ensembl nucleotide ID ENSG00000125378
Gene name Bone morphogenetic protein 4
Gene symbol BMP4
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 18771417; 19839778; 23227324; 22182590; 23237431; 19249007; 26424979; 22514733; 19914800;
Functional description Induces cartilage and bone formation. Also acts in mesoderm induction, tooth development, limb formation and fracture repair. Acts in concert with PTHLH/PTHRP to stimulate ductal outgrowth during embryonic mammary development and to inhibit hair follicle induction (By similarity).
Sequence
MIPGNRMLMV VLLCQVLLGG ASHASLIPET GKKKVAEIQG HAGGRRSGQS HELLRDFEAT 60
LLQMFGLRRR PQPSKSAVIP DYMRDLYRLQ SGEEEEEQIH STGLEYPERP ASRANTVRSF 120
HHEEHLENIP GTSENSAFRF LFNLSSIPEN EVISSAELRL FREQVDQGPD WERGFHRINI 180
YEVMKPPAEV VPGHLITRLL DTRLVHHNVT RWETFDVSPA VLRWTREKQP NYGLAIEVTH 240
LHQTRTHQGQ HVRISRSLPQ GSGNWAQLRP LLVTFGHDGR GHALTRRRRA KRSPKHHSQR 300
ARKKNKNCRR HSLYVDFSDV GWNDWIVAPP GYQAFYCHGD CPFPLADHLN STNHAIVQTL 360
VNSVNSSIPK ACCVPTELSA ISMLYLDEYD KVVLKNYQEM VVEGCGCR 408

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologBMP4407216Q2KJH1Bos taurusPredictionMore>>
1:1 orthologBMP4490695F1PDL1Canis lupus familiarisPredictionMore>>
1:1 orthologBMP4100860789A0A2Z4FRB3Capra hircusPredictionMore>>
1:1 orthologBMP4100034048F6QG82Equus caballusPredictionMore>>
1:1 orthologBMP4652P12644CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologBmp412159P21275CPO,CLOE11.5, E12.5, E13.5, E14.5, E15.5, E16.5Mus musculusPublicationMore>>
1:1 orthologBMP4100113425A7LJT9Sus scrofaPredictionMore>>
1:1 orthologBMP4100009569G1T0L5Oryctolagus cuniculusPredictionMore>>
1:1 orthologBmp425296Q6AYU9Rattus norvegicusPredictionMore>>
1:1 orthologbmp4F1QAD6Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
BMP4rs17563; c.538T>CPolymerase chain reaction-restriction fragment length polymorphism 26424979
BMP4rs17563 C allelePCR-RFLP23227324
BMP4rs17563Real-time polymerase chain reaction using the Taqman assay method23237431
BMP4rs10130587Genotyping22514733
BMP4rs2738265Genotyping22514733
BMP4rs2761887Genotyping22514733
BMP4rs762642Genotyping22514733
BMP4c.-5514G > APCR22182590
BMP4c.-5365C > TPCR22182590
BMP4c.-5049C > TPCR22182590
BMP4rs2855530PCR22182590
BMP4rs17563Genotyping19914800
BMP4rs762642TDT19839778
BMP4rs2855532TDT19839778
BMP4rs1957860TDT19839778
BMP4c.538T>CPCR; RFLP18771417
BMP4rs17563GWAS3221112
BMP4rs762642T>GDirect sequencing; PCR29860186
BMP4rs17563T>CDirect sequencing; PCR29860186
BMP4rs10130587C>GDirect sequencing; PCR29860186
BMP4rs35107139T>GDirect sequencing; PCR29860186
BMP4c.455T>C; p.V152AWES and Sanger sequencing26449438

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005125 cytokine activityIDA
GO:0005125 cytokine activityIBA
GO:0005515 protein bindingIPI
GO:0008083 growth factor activityIEA
GO:0008201 heparin bindingIEA
GO:0039706 co-receptor bindingIPI
GO:0042056 chemoattractant activityIDA
GO:0070700 BMP receptor bindingIBA
GO:0070700 BMP receptor bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIISS
GO:0000122 negative regulation of transcription by RNA polymerase IIIBA
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0000186 activation of MAPKK activityIDA
GO:0001649 osteoblast differentiationIDA
GO:0001657 ureteric bud developmentIDA
GO:0001658 branching involved in ureteric bud morphogenesisIDA
GO:0001822 kidney developmentIMP
GO:0001823 mesonephros developmentIEP
GO:0001843 neural tube closureIEA
GO:0001934 positive regulation of protein phosphorylationIDA
GO:0001938 positive regulation of endothelial cell proliferationIDA
GO:0001958 endochondral ossificationISS
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesisIDA
GO:0002062 chondrocyte differentiationISS
GO:0002244 hematopoietic progenitor cell differentiationIDA
GO:0002320 lymphoid progenitor cell differentiationIMP
GO:0003014 renal system processIEA
GO:0003130 BMP signaling pathway involved in heart inductionIMP
GO:0003139 secondary heart field specificationIMP
GO:0003148 outflow tract septum morphogenesisISS
GO:0003149 membranous septum morphogenesisISS
GO:0003180 aortic valve morphogenesisISS
GO:0003184 pulmonary valve morphogenesisISS
GO:0003197 endocardial cushion developmentISS
GO:0003279 cardiac septum developmentTAS
GO:0003323 type B pancreatic cell developmentIDA
GO:0003337 mesenchymal to epithelial transition involved in metanephros morphogenesisIDA
GO:0007182 common-partner SMAD protein phosphorylationIDA
GO:0007224 smoothened signaling pathwayIEP
GO:0007281 germ cell developmentIEA
GO:0007492 endoderm developmentIEA
GO:0007500 mesodermal cell fate determinationIEA
GO:0008284 positive regulation of cell population proliferationIDA
GO:0008285 negative regulation of cell population proliferationIDA
GO:0009791 post-embryonic developmentIDA
GO:0009948 anterior/posterior axis specificationIEA
GO:0010159 specification of animal organ positionIEA
GO:0010453 regulation of cell fate commitmentIDA
GO:0010595 positive regulation of endothelial cell migrationIDA
GO:0010628 positive regulation of gene expressionIDA
GO:0010629 negative regulation of gene expressionIDA
GO:0010718 positive regulation of epithelial to mesenchymal transitionIEA
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylationIDA
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylationIMP
GO:0010862 positive regulation of pathway-restricted SMAD protein phosphorylationIBA
GO:0010942 positive regulation of cell deathIDA
GO:0021537 telencephalon developmentIDA
GO:0021904 dorsal/ventral neural tube patterningIEA
GO:0021978 telencephalon regionalizationIEA
GO:0021983 pituitary gland developmentIEA
GO:0030218 erythrocyte differentiationIEA
GO:0030224 monocyte differentiationIDA
GO:0030225 macrophage differentiationIDA
GO:0030501 positive regulation of bone mineralizationIDA
GO:0030509 BMP signaling pathwayIMP
GO:0030509 BMP signaling pathwayIDA
GO:0030509 BMP signaling pathwayIBA
GO:0030513 positive regulation of BMP signaling pathwayISS
GO:0032092 positive regulation of protein bindingIDA
GO:0032331 negative regulation of chondrocyte differentiationIEA
GO:0032967 positive regulation of collagen biosynthetic processIDA
GO:0033085 negative regulation of T cell differentiation in thymusIMP
GO:0033088 negative regulation of immature T cell proliferation in thymusIMP
GO:0034504 protein localization to nucleusIDA
GO:0035116 embryonic hindlimb morphogenesisIEA
GO:0035990 tendon cell differentiationISS
GO:0035993 deltoid tuberosity developmentISS
GO:0042306 regulation of protein import into nucleusIDA
GO:0042326 negative regulation of phosphorylationIDA
GO:0042475 odontogenesis of dentin-containing toothIEA
GO:0042476 odontogenesisIGI
GO:0042487 regulation of odontogenesis of dentin-containing toothIEA
GO:0042733 embryonic digit morphogenesisIEA
GO:0043065 positive regulation of apoptotic processIDA
GO:0043066 negative regulation of apoptotic processIDA
GO:0043066 negative regulation of apoptotic processIBA
GO:0043401 steroid hormone mediated signaling pathwayIMP
GO:0043407 negative regulation of MAP kinase activityIDA
GO:0043687 post-translational protein modificationTAS
GO:0044267 cellular protein metabolic processTAS
GO:0045603 positive regulation of endothelial cell differentiationIEA
GO:0045606 positive regulation of epidermal cell differentiationIDA
GO:0045662 negative regulation of myoblast differentiationIDA
GO:0045666 positive regulation of neuron differentiationIEA
GO:0045669 positive regulation of osteoblast differentiationIDA
GO:0045778 positive regulation of ossificationIDA
GO:0045786 negative regulation of cell cycleIDA
GO:0045839 negative regulation of mitotic nuclear divisionIDA
GO:0045843 negative regulation of striated muscle tissue developmentIDA
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045893 positive regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIISS
GO:0045944 positive regulation of transcription by RNA polymerase IIIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIGI
GO:0048286 lung alveolus developmentIDA
GO:0048392 intermediate mesodermal cell differentiationIDA
GO:0048661 positive regulation of smooth muscle cell proliferationIDA
GO:0048663 neuron fate commitmentIEA
GO:0048701 embryonic cranial skeleton morphogenesisIEA
GO:0048745 smooth muscle tissue developmentISS
GO:0048745 smooth muscle tissue developmentIEP
GO:0048754 branching morphogenesis of an epithelial tubeIDA
GO:0050679 positive regulation of epithelial cell proliferationIDA
GO:0050680 negative regulation of epithelial cell proliferationIEA
GO:0050918 positive chemotaxisIEA
GO:0051150 regulation of smooth muscle cell differentiationIEA
GO:0055007 cardiac muscle cell differentiationIEA
GO:0055020 positive regulation of cardiac muscle fiber developmentIMP
GO:0060113 inner ear receptor cell differentiationIEA
GO:0060197 cloacal septationIEA
GO:0060235 lens induction in camera-type eyeIEA
GO:0060272 embryonic skeletal joint morphogenesisIEA
GO:0060363 cranial suture morphogenesisIEA
GO:0060391 positive regulation of SMAD protein signal transductionIDA
GO:0060393 regulation of pathway-restricted SMAD protein phosphorylationIDA
GO:0060395 SMAD protein signal transductionIDA
GO:0060395 SMAD protein signal transductionIBA
GO:0060425 lung morphogenesisIDA
GO:0060433 bronchus developmentIDA
GO:0060438 trachea developmentIDA
GO:0060440 trachea formationIEA
GO:0060441 epithelial tube branching involved in lung morphogenesisIDA
GO:0060442 branching involved in prostate gland morphogenesisIEA
GO:0060449 bud elongation involved in lung branchingIEA
GO:0060502 epithelial cell proliferation involved in lung morphogenesisIDA
GO:0060503 bud dilation involved in lung branchingIDA
GO:0060548 negative regulation of cell deathIDA
GO:0060592 mammary gland formationIEA
GO:0060684 epithelial-mesenchymal cell signalingIEA
GO:0060686 negative regulation of prostatic bud formationIEA
GO:0060687 regulation of branching involved in prostate gland morphogenesisIEA
GO:0060976 coronary vasculature developmentISS
GO:0061036 positive regulation of cartilage developmentIDA
GO:0061047 positive regulation of branching involved in lung morphogenesisISS
GO:0061149 BMP signaling pathway involved in ureter morphogenesisISS
GO:0061151 BMP signaling pathway involved in renal system segmentationISS
GO:0061155 pulmonary artery endothelial tube morphogenesisIDA
GO:0061312 BMP signaling pathway involved in heart developmentISS
GO:0061626 pharyngeal arch artery morphogenesisISS
GO:0070244 negative regulation of thymocyte apoptotic processIMP
GO:0070374 positive regulation of ERK1 and ERK2 cascadeIEA
GO:0071773 cellular response to BMP stimulusIMP
GO:0071893 BMP signaling pathway involved in nephric duct formationIDA
GO:0072015 glomerular visceral epithelial cell developmentIEA
GO:0072097 negative regulation of branch elongation involved in ureteric bud branching by BMP signaling pathwayIDA
GO:0072101 specification of ureteric bud anterior/posterior symmetry by BMP signaling pathwayIDA
GO:0072104 glomerular capillary formationISS
GO:0072125 negative regulation of glomerular mesangial cell proliferationIDA
GO:0072138 mesenchymal cell proliferation involved in ureteric bud developmentIEA
GO:0072161 mesenchymal cell differentiation involved in kidney developmentIEA
GO:0072192 ureter epithelial cell differentiationISS
GO:0072193 ureter smooth muscle cell differentiationISS
GO:0072198 mesenchymal cell proliferation involved in ureter developmentIEA
GO:0072200 negative regulation of mesenchymal cell proliferation involved in ureter developmentIDA
GO:0072205 metanephric collecting duct developmentISS
GO:0090184 positive regulation of kidney developmentIDA
GO:0090191 negative regulation of branching involved in ureteric bud morphogenesisIDA
GO:0090194 negative regulation of glomerulus developmentIDA
GO:1901964 positive regulation of cell proliferation involved in outflow tract morphogenesisISS
GO:1902894 negative regulation of pri-miRNA transcription by RNA polymerase IIIDA
GO:1903800 positive regulation of production of miRNAs involved in gene silencing by miRNAIDA
GO:1905312 positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesisIEA
GO:2000005 negative regulation of metanephric S-shaped body morphogenesisIDA
GO:2000007 negative regulation of metanephric comma-shaped body morphogenesisIDA
GO:2000137 negative regulation of cell proliferation involved in heart morphogenesisIMP
GO:2001237 negative regulation of extrinsic apoptotic signaling pathwayISS
GO:0003150 muscular septum morphogenesisISS
GO:0003198 epithelial to mesenchymal transition involved in endocardial cushion formationISS
GO:0003215 cardiac right ventricle morphogenesisISS
GO:0003277 apoptotic process involved in endocardial cushion morphogenesisISS
GO:1902893 regulation of pri-miRNA transcription by RNA polymerase IIIMP
GO:1905072 cardiac jelly developmentISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionISS
GO:0005576 extracellular regionTAS
GO:0005615 extracellular spaceISS
GO:0005615 extracellular spaceIDA
GO:0005615 extracellular spaceIBA
GO:0005788 endoplasmic reticulum lumenTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1566948 Elastic fibre formationTAS
R-HSA-2129379 Molecules associated with elastic fibresTAS
R-HSA-381426 Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)TAS
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-597592 Post-translational protein modificationTAS
R-HSA-8957275 Post-translational protein phosphorylationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0891 Chondrogenesis
KW-0165 Cleavage on pair of basic residues
KW-0202 Cytokine
KW-0217 Developmental protein
KW-0221 Differentiation
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0339 Growth factor
KW-1013 Microphthalmia
KW-0892 Osteogenesis
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR029034 Cystine-knot_cytokine
IPR001839 TGF-b_C
IPR001111 TGF-b_propeptide
IPR015615 TGF-beta-rel
IPR017948 TGFb_CS

PROSITE

PROSITE ID PROSITE Term
PS00250 TGF_BETA_1
PS51362 TGF_BETA_2

Pfam

Pfam ID Pfam Term
PF00019 TGF_beta
PF00688 TGFb_propeptide

Protein-protein interaction

Protein-miRNA interaction