Gene: KRT5

Basic information

Tag Content
Uniprot ID P13647; Q6PI71; Q6UBJ0; Q8TA91;
Entrez ID 3852
Genbank protein ID AAQ81588.1; AAH71906.1; AAA36143.1; AAH42132.1; AAA36145.1; AAH24292.1; AAF97931.1;
Genbank nucleotide ID NM_000424.3
Ensembl protein ID ENSP00000252242
Ensembl nucleotide ID ENSG00000186081
Gene name Keratin, type II cytoskeletal 5
Gene symbol KRT5
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description
Sequence
MSRQSSVSFR SGGSRSFSTA SAITPSVSRT SFTSVSRSGG GGGGGFGRVS LAGACGVGGY 60
GSRSLYNLGG SKRISISTSG GSFRNRFGAG AGGGYGFGGG AGSGFGFGGG AGGGFGLGGG 120
AGFGGGFGGP GFPVCPPGGI QEVTVNQSLL TPLNLQIDPS IQRVRTEERE QIKTLNNKFA 180
SFIDKVRFLE QQNKVLDTKW TLLQEQGTKT VRQNLEPLFE QYINNLRRQL DSIVGERGRL 240
DSELRNMQDL VEDFKNKYED EINKRTTAEN EFVMLKKDVD AAYMNKVELE AKVDALMDEI 300
NFMKMFFDAE LSQMQTHVSD TSVVLSMDNN RNLDLDSIIA EVKAQYEEIA NRSRTEAESW 360
YQTKYEELQQ TAGRHGDDLR NTKHEISEMN RMIQRLRAEI DNVKKQCANL QNAIADAEQR 420
GELALKDARN KLAELEEALQ KAKQDMARLL REYQELMNTK LALDVEIATY RKLLEGEECR 480
LSGEGVGPVN ISVVTSSVSS GYGSGSGYGG GLGGGLGGGL GGGLAGGSSG SYYSSSSGGV 540
GLGGGLSVGG SGFSASSGRG LGVGFGSGGG SSSSVKFVST TSSSRKSFKS

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologKRT5A5D7M6Bos taurusPredictionMore>>
1:1 orthologKRT5A0A452DMF8Capra hircusPredictionMore>>
1:1 orthologKRT53852P13647Homo sapiensPredictionMore>>
1:1 orthologKrt5110308Q922U2CPOMus musculusPublicationMore>>
1:1 orthologKRT5100352658G1TDN6Oryctolagus cuniculusPredictionMore>>
1:1 orthologKrt5F7FFV2Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005200 structural constituent of cytoskeletonTAS
GO:0005515 protein bindingIPI
GO:0097110 scaffold protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0007010 cytoskeleton organizationIEA
GO:0008544 epidermis developmentTAS
GO:0031424 keratinizationTAS
GO:0031581 hemidesmosome assemblyTAS
GO:0070268 cornificationTAS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusHDA
GO:0005737 cytoplasmIDA
GO:0005829 cytosolTAS
GO:0005882 intermediate filamentIDA
GO:0005886 plasma membraneIEA
GO:0016020 membraneHDA
GO:0045095 keratin filamentIDA
GO:0070062 extracellular exosomeHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1266738 Developmental BiologyTAS
R-HSA-1500931 Cell-Cell communicationTAS
R-HSA-446107 Type I hemidesmosome assemblyTAS
R-HSA-446728 Cell junction organizationTAS
R-HSA-6805567 KeratinizationTAS
R-HSA-6809371 Formation of the cornified envelopeTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0175 Coiled coil
KW-0225 Disease mutation
KW-0263 Epidermolysis bullosa
KW-0403 Intermediate filament
KW-0416 Keratin
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR018039 IF_conserved
IPR039008 IF_rod_dom
IPR042180 IF_rod_dom_coil1B
IPR032444 Keratin_2_head
IPR003054 Keratin_II

PROSITE

PROSITE ID PROSITE Term
PS00226 IF_ROD_1
PS51842 IF_ROD_2

Pfam

Pfam ID Pfam Term
PF00038 Filament
PF16208 Keratin_2_head

Protein-protein interaction

Protein-miRNA interaction