Gene: ITGB6

Basic information

Tag Content
Uniprot ID P18564; B2R9W5; C9JA97; Q0VA95; Q16500; Q53RG5; Q53RR6;
Entrez ID 3694
Genbank protein ID BAG36662.1; AAI21179.1; AAA36122.2; AAX93093.1; AAY24053.1; EAX11390.1; AAB23690.1;
Genbank nucleotide ID NM_001282388.1; NM_001282355.1; NM_001282353.1; NM_000888.4;
Ensembl protein ID ENSP00000386828; ENSP00000283249; ENSP00000386367;
Ensembl nucleotide ID ENSG00000115221
Gene name Integrin beta-6
Gene symbol ITGB6
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Integrin alpha-V:beta-6 (ITGAV:ITGB6) is a receptor for fibronectin and cytotactin (PubMed:17545607, PubMed:17158881). It recognizes the sequence R-G-D in its ligands (PubMed:17545607, PubMed:17158881). Internalisation of integrin alpha-V/beta-6 via clathrin-mediated endocytosis promotes carcinoma cell invasion (PubMed:17545607, PubMed:17158881). ITGAV:ITGB6 acts as a receptor for fibrillin-1 (FBN1) and mediates R-G-D-dependent cell adhesion to FBN1 (PubMed:17158881). Integrin alpha-V:beta-6 (ITGAV:ITGB6) mediates R-G-D-dependent release of transforming growth factor beta-1 (TGF-beta-1) from regulatory Latency-associated peptide (LAP), thereby playing a key role in TGF-beta-1 activation (PubMed:15184403, PubMed:22278742, PubMed:28117447).
Sequence
MGIELLCLFF LFLGRNDHVQ GGCALGGAET CEDCLLIGPQ CAWCAQENFT HPSGVGERCD 60
TPANLLAKGC QLNFIENPVS QVEILKNKPL SVGRQKNSSD IVQIAPQSLI LKLRPGGAQT 120
LQVHVRQTED YPVDLYYLMD LSASMDDDLN TIKELGSRLS KEMSKLTSNF RLGFGSFVEK 180
PVSPFVKTTP EEIANPCSSI PYFCLPTFGF KHILPLTNDA ERFNEIVKNQ KISANIDTPE 240
GGFDAIMQAA VCKEKIGWRN DSLHLLVFVS DADSHFGMDS KLAGIVIPND GLCHLDSKNE 300
YSMSTVLEYP TIGQLIDKLV QNNVLLIFAV TQEQVHLYEN YAKLIPGATV GLLQKDSGNI 360
LQLIISAYEE LRSEVELEVL GDTEGLNLSF TAICNNGTLF QHQKKCSHMK VGDTASFSVT 420
VNIPHCERRS RHIIIKPVGL GDALELLVSP ECNCDCQKEV EVNSSKCHHG NGSFQCGVCA 480
CHPGHMGPRC ECGEDMLSTD SCKEAPDHPS CSGRGDCYCG QCICHLSPYG NIYGPYCQCD 540
NFSCVRHKGL LCGGNGDCDC GECVCRSGWT GEYCNCTTST DSCVSEDGVL CSGRGDCVCG 600
KCVCTNPGAS GPTCERCPTC GDPCNSKRSC IECHLSAAGQ AREECVDKCK LAGATISEEE 660
DFSKDGSVSC SLQGENECLI TFLITTDNEG KTIIHSINEK DCPKPPNIPM IMLGVSLAIL 720
LIGVVLLCIW KLLVSFHDRK EVAKFEAERS KAKWQTGTNP LYRGSTSTFK NVTYKHREKQ 780
KVDLSTDC 788

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologITGB6282644Q8SQB8Bos taurusPredictionMore>>
1:1 orthologITGB6102188539A0A452EJ04Capra hircusPredictionMore>>
1:1 orthologITGB63694P18564Homo sapiensPredictionMore>>
1:1 orthologItgb616420Q9Z0T9CPOMus musculusPublicationMore>>
1:1 orthologITGB6A0A2I3SC11Pan troglodytesPredictionMore>>
1:1 orthologA0A480ES98Sus scrofaPredictionMore>>
1:1 orthologItgb6311061Q6AYF4Rattus norvegicusPredictionMore>>
1:1 orthologitgb6100499533F1QGX0Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0001618 virus receptor activityIEA
GO:0005178 integrin bindingIBA
GO:0005515 protein bindingIPI
GO:0038023 signaling receptor activityIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0006954 inflammatory responseIEA
GO:0007155 cell adhesionTAS
GO:0007160 cell-matrix adhesionIBA
GO:0007229 integrin-mediated signaling pathwayIBA
GO:0016477 cell migrationIBA
GO:0030198 extracellular matrix organizationTAS
GO:0033627 cell adhesion mediated by integrinIDA
GO:0033627 cell adhesion mediated by integrinIBA
GO:0038044 transforming growth factor-beta secretionIEA
GO:0046718 viral entry into host cellIEA
GO:1901388 regulation of transforming growth factor beta activationIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005654 nucleoplasmIDA
GO:0005813 centrosomeIDA
GO:0005886 plasma membraneTAS
GO:0005925 focal adhesionIDA
GO:0005925 focal adhesionIBA
GO:0008305 integrin complexTAS
GO:0009897 external side of plasma membraneIEA
GO:0030054 cell junctionIDA
GO:0034685 integrin alphav-beta6 complexIBA
GO:0034685 integrin alphav-beta6 complexIDA
GO:0043235 receptor complexIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1566948 Elastic fibre formationTAS
R-HSA-2129379 Molecules associated with elastic fibresTAS
R-HSA-216083 Integrin cell surface interactionsTAS
R-HSA-3000178 ECM proteoglycansTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0986 Amelogenesis imperfecta
KW-0130 Cell adhesion
KW-0965 Cell junction
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-1183 Host cell receptor for virus entry
KW-0945 Host-virus interaction
KW-0401 Integrin
KW-0472 Membrane
KW-0621 Polymorphism
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR013111 EGF_extracell
IPR040622 I-EGF_1
IPR033760 Integrin_beta_N
IPR015812 Integrin_bsu
IPR015436 Integrin_bsu-6
IPR014836 Integrin_bsu_cyt_dom
IPR012896 Integrin_bsu_tail
IPR036349 Integrin_bsu_tail_dom_sf
IPR002369 Integrin_bsu_VWA
IPR032695 Integrin_dom_sf
IPR016201 PSI
IPR036465 vWFA_dom_sf

PROSITE

PROSITE ID PROSITE Term
PS00022 EGF_1
PS01186 EGF_2
PS00243 INTEGRIN_BETA

Pfam

Pfam ID Pfam Term
PF07974 EGF_2
PF18372 I-EGF_1
PF08725 Integrin_b_cyt
PF07965 Integrin_B_tail
PF00362 Integrin_beta
PF17205 PSI_integrin

Protein-protein interaction

Protein-miRNA interaction