Gene: GLDC

Basic information

Tag Content
Uniprot ID P23378; Q2M2F8;
Entrez ID 2731
Genbank protein ID AAA36463.1; BAG36841.1; EAW58740.1; BAA14286.1; AAI11996.1; AAA36478.1; AAI11994.1;
Genbank nucleotide ID NM_000170.2
Ensembl protein ID ENSP00000370737
Ensembl nucleotide ID ENSG00000178445
Gene name Glycine dehydrogenase (decarboxylating), mitochondrial
Gene symbol GLDC
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description The glycine cleavage system catalyzes the degradation of glycine. The P protein (GLDC) binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein (GCSH).
Sequence
MQSCARAWGL RLGRGVGGGR RLAGGSGPCW APRSRDSSSG GGDSAAAGAS RLLERLLPRH 60
DDFARRHIGP GDKDQREMLQ TLGLASIDEL IEKTVPANIR LKRPLKMEDP VCENEILATL 120
HAISSKNQIW RSYIGMGYYN CSVPQTILRN LLENSGWITQ YTPYQPEVSQ GRLESLLNYQ 180
TMVCDITGLD MANASLLDEG TAAAEALQLC YRHNKRRKFL VDPRCHPQTI AVVQTRAKYT 240
GVLTELKLPC EMDFSGKDVS GVLFQYPDTE GKVEDFTELV ERAHQSGSLA CCATDLLALC 300
ILRPPGEFGV DIALGSSQRF GVPLGYGGPH AAFFAVRESL VRMMPGRMVG VTRDATGKEV 360
YRLALQTREQ HIRRDKATSN ICTAQALLAN MAAMFAIYHG SHGLEHIARR VHNATLILSE 420
GLKRAGHQLQ HDLFFDTLKI QCGCSVKEVL GRAAQRQINF RLFEDGTLGI SLDETVNEKD 480
LDDLLWIFGC ESSAELVAES MGEECRGIPG SVFKRTSPFL THQVFNSYHS ETNIVRYMKK 540
LENKDISLVH SMIPLGSCTM KLNSSSELAP ITWKEFANIH PFVPLDQAQG YQQLFRELEK 600
DLCELTGYDQ VCFQPNSGAQ GEYAGLATIR AYLNQKGEGH RTVCLIPKSA HGTNPASAHM 660
AGMKIQPVEV DKYGNIDAVH LKAMVDKHKE NLAAIMITYP STNGVFEENI SDVCDLIHQH 720
GGQVYLDGAN MNAQVGICRP GDFGSDVSHL NLHKTFCIPH GGGGPGMGPI GVKKHLAPFL 780
PNHPVISLKR NEDACPVGTV SAAPWGSSSI LPISWAYIKM MGGKGLKQAT ETAILNANYM 840
AKRLETHYRI LFRGARGYVG HEFILDTRPF KKSANIEAVD VAKRLQDYGF HAPTMSWPVA 900
GTLMVEPTES EDKAELDRFC DAMISIRQEI ADIEEGRIDP RVNPLKMSPH SLTCVTSSHW 960
DRPYSREVAA FPLPFVKPEN KFWPTIARID DIYGDQHLVC TCPPMEVYES PFSEQKRASS 1020

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologGLDC507688E1BJQ1Bos taurusPredictionMore>>
1:1 orthologGLDC481534A0A5F4C8B1Canis lupus familiarisPredictionMore>>
1:1 orthologGLDC102174205A0A452FM63Capra hircusPredictionMore>>
1:1 orthologGLDC2731P23378Homo sapiensPredictionMore>>
1:1 orthologGldc104174Q91W43CPOMus musculusPublicationMore>>
1:1 orthologGLDCA0A2I3RPM1Pan troglodytesPredictionMore>>
1:1 orthologA0A480TLS3Sus scrofaPredictionMore>>
1:1 orthologGLDC100343694G1SL36Oryctolagus cuniculusPredictionMore>>
1:1 orthologGldcA0A0G2JUZ5Rattus norvegicusPredictionMore>>
1:1 orthologgldcA0A0G2KSN1Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004375 glycine dehydrogenase (decarboxylating) activityIBA
GO:0004375 glycine dehydrogenase (decarboxylating) activityIDA
GO:0009055 electron transfer activityTAS
GO:0016594 glycine bindingIBA
GO:0016829 lyase activityIEA
GO:0019899 enzyme bindingIEA
GO:0030170 pyridoxal phosphate bindingIBA
GO:0042803 protein homodimerization activityISS
GO:0070280 pyridoxal bindingISS

GO:Biological Process

GO ID GO Term Evidence
GO:0006546 glycine catabolic processIDA
GO:0019464 glycine decarboxylation via glycine cleavage systemIBA
GO:0022900 electron transport chainIEA
GO:0036255 response to methylamineISS
GO:0065003 protein-containing complex assemblyIEA
GO:1903442 response to lipoic acidISS
GO:1990830 cellular response to leukemia inhibitory factorIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005654 nucleoplasmIDA
GO:0005739 mitochondrionIDA
GO:0005739 mitochondrionIBA
GO:0005759 mitochondrial matrixTAS
GO:0005886 plasma membraneIDA
GO:0005960 glycine cleavage complexIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1430728 MetabolismTAS
R-HSA-389661 Glyoxylate metabolism and glycine degradationTAS
R-HSA-6783984 Glycine degradationTAS
R-HSA-71291 Metabolism of amino acids and derivativesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0225 Disease mutation
KW-0496 Mitochondrion
KW-0560 Oxidoreductase
KW-0663 Pyridoxal phosphate
KW-1185 Reference proteome
KW-0809 Transit peptide

Interpro

InterPro ID InterPro Term
IPR001597 ArAA_b-elim_lyase/Thr_aldolase
IPR003437 GcvP
IPR020581 GDC_P
IPR015424 PyrdxlP-dep_Trfase
IPR015422 PyrdxlP-dep_Trfase_dom1
IPR015421 PyrdxlP-dep_Trfase_major

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF01212 Beta_elim_lyase
PF02347 GDC-P

Protein-protein interaction

Protein-miRNA interaction