Gene: PCGF2

Basic information

Tag Content
Uniprot ID P35227; A6NGD8;
Entrez ID 7703
Genbank protein ID AAH24255.1; EAW60528.1; BAA03074.1; AAH04858.1;
Genbank nucleotide ID XM_005257640.2; XM_005257641.4; XM_017025016.1; XM_005257642.3; NM_007144.2;
Ensembl protein ID ENSP00000482815; ENSP00000482063; ENSP00000488872; ENSP00000478517; ENSP00000478970; ENSP00000488868;
Ensembl nucleotide ID ENSG00000278644; ENSG00000277258;
Gene name Polycomb group RING finger protein 2
Gene symbol PCGF2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Transcriptional repressor. Binds specifically to the DNA sequence 5'-GACTNGACT-3'. Has tumor suppressor activity. May play a role in control of cell proliferation and/or neural cell development. Regulates proliferation of early T progenitor cells by maintaining expression of HES1. Also plays a role in antero-posterior specification of the axial skeleton and negative regulation of the self-renewal activity of hematopoietic stem cells (By similarity). Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility (PubMed:26151332). Within the PRC1-like complex, regulates RNF2 ubiquitin ligase activity (PubMed:26151332).
Sequence
MHRTTRIKIT ELNPHLMCAL CGGYFIDATT IVECLHSFCK TCIVRYLETN KYCPMCDVQV 60
HKTRPLLSIR SDKTLQDIVY KLVPGLFKDE MKRRRDFYAA YPLTEVPNGS NEDRGEVLEQ 120
EKGALSDDEI VSLSIEFYEG ARDRDEKKGP LENGDGDKEK TGVRFLRCPA AMTVMHLAKF 180
LRNKMDVPSK YKVEVLYEDE PLKEYYTLMD IAYIYPWRRN GPLPLKYRVQ PACKRLTLAT 240
VPTPSEGTNT SGASECESVS DKAPSPATLP ATSSSLPSPA TPSHGSPSSH GPPATHPTSP 300
TPPSTASGAT TAANGGSLNC LQTPSSTSRG RKMTVNGAPV PPLT 344

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPCGF2505147E1BMR4Bos taurusPredictionMore>>
1:1 orthologPCGF2102174970A0A452F706Capra hircusPredictionMore>>
1:1 orthologPCGF27703P35227Homo sapiensPredictionMore>>
1:1 orthologPcgf222658P23798CPOMus musculusPublicationMore>>
1:1 orthologPCGF2454614H2QCT2Pan troglodytesPredictionMore>>
1:1 orthologPCGF2A0A287A7A5Sus scrofaPredictionMore>>
1:1 orthologPcgf2287662B2RZ82Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIEA
GO:0003700 DNA-binding transcription factor activityTAS
GO:0005515 protein bindingIPI
GO:0046872 metal ion bindingIEA
GO:1990841 promoter-specific chromatin bindingIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIMP
GO:0000122 negative regulation of transcription by RNA polymerase IIIBA
GO:0001701 in utero embryonic developmentIEA
GO:0006342 chromatin silencingIBA
GO:0009952 anterior/posterior pattern specificationIEA
GO:0016573 histone acetylationIEA
GO:0036353 histone H2A-K119 monoubiquitinationIBA
GO:0036353 histone H2A-K119 monoubiquitinationIMP
GO:0048704 embryonic skeletal system morphogenesisIEA
GO:0070301 cellular response to hydrogen peroxideIEA
GO:0070317 negative regulation of G0 to G1 transitionTAS
GO:2001234 negative regulation of apoptotic signaling pathwayIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinIDA
GO:0001739 sex chromatinIEA
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0016604 nuclear bodyIEA
GO:0031519 PcG protein complexIDA
GO:0035102 PRC1 complexIDA
GO:0035102 PRC1 complexIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1266738 Developmental BiologyIEA
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-2990846 SUMOylationTAS
R-HSA-2990846 SUMOylationIEA
R-HSA-3108214 SUMOylation of DNA damage response and repair proteinsTAS
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteinsTAS
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteinsIEA
R-HSA-3899300 SUMOylation of transcription cofactorsTAS
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-392499 Metabolism of proteinsIEA
R-HSA-4551638 SUMOylation of chromatin organization proteinsTAS
R-HSA-4570464 SUMOylation of RNA binding proteinsTAS
R-HSA-4655427 SUMOylation of DNA methylation proteinsIEA
R-HSA-5617472 Activation of anterior HOX genes in hindbrain development during early embryogenesisIEA
R-HSA-5619507 Activation of HOX genes during differentiationIEA
R-HSA-597592 Post-translational protein modificationTAS
R-HSA-597592 Post-translational protein modificationIEA
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-74160 Gene expression (Transcription)TAS
R-HSA-8953750 Transcriptional Regulation by E2F6TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-1017 Isopeptide bond
KW-0991 Mental retardation
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR032443 RAWUL
IPR001841 Znf_RING
IPR013083 Znf_RING/FYVE/PHD
IPR017907 Znf_RING_CS

PROSITE

PROSITE ID PROSITE Term
PS00518 ZF_RING_1
PS50089 ZF_RING_2

Pfam

Pfam ID Pfam Term
PF16207 RAWUL

Protein-protein interaction

Protein-miRNA interaction