Gene: ZEB1

Basic information

Tag Content
Uniprot ID P37275; B4DJV0; B4DUW9; E9PCM7; F5H4I8; Q12924; Q13800; Q2KJ05; Q5T968; Q5VZ84; Q8NB68;
Entrez ID 6935
Genbank protein ID BAC03673.1; BAG62481.1; BAA03646.1; BAG58962.1; AAA20602.1; AAI12393.1; EAW85989.1;
Genbank nucleotide ID NM_001174096.1; NM_030751.5; NM_001174095.1; NM_001128128.2; NM_001174094.1; NM_001174093.1;
Ensembl protein ID ENSP00000354487; ENSP00000452787; ENSP00000391612; ENSP00000444891; ENSP00000319248;
Ensembl nucleotide ID ENSG00000148516
Gene name Zinc finger E-box-binding homeobox 1
Gene symbol ZEB1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Acts as a transcriptional repressor. Inhibits interleukin-2 (IL-2) gene expression. Enhances or represses the promoter activity of the ATP1A1 gene depending on the quantity of cDNA and on the cell type. Represses E-cadherin promoter and induces an epithelial-mesenchymal transition (EMT) by recruiting SMARCA4/BRG1. Represses BCL6 transcription in the presence of the corepressor CTBP1. Positively regulates neuronal differentiation. Represses RCOR1 transcription activation during neurogenesis. Represses transcription by binding to the E box (5'-CANNTG-3'). Promotes tumorigenicity by repressing stemness-inhibiting microRNAs.
Sequence
MADGPRCKRR KQANPRRNNV TNYNTVVETN SDSDDEDKLH IVEEESVTDA ADCEGVPEDD 60
LPTDQTVLPG RSSEREGNAK NCWEDDRKEG QEILGPEAQA DEAGCTVKDD ECESDAENEQ 120
NHDPNVEEFL QQQDTAVIFP EAPEEDQRQG TPEASGHDEN GTPDAFSQLL TCPYCDRGYK 180
RFTSLKEHIK YRHEKNEDNF SCSLCSYTFA YRTQLERHMT SHKSGRDQRH VTQSGCNRKF 240
KCTECGKAFK YKHHLKEHLR IHSGEKPYEC PNCKKRFSHS GSYSSHISSK KCISLIPVNG 300
RPRTGLKTSQ CSSPSLSASP GSPTRPQIRQ KIENKPLQEQ LSVNQIKTEP VDYEFKPIVV 360
ASGINCSTPL QNGVFTGGGP LQATSSPQGM VQAVVLPTVG LVSPISINLS DIQNVLKVAV 420
DGNVIRQVLE NNQANLASKE QETINASPIQ QGGHSVISAI SLPLVDQDGT TKIIINYSLE 480
QPSQLQVVPQ NLKKENPVAT NSCKSEKLPE DLTVKSEKDK SFEGGVNDST CLLCDDCPGD 540
INALPELKHY DLKQPTQPPP LPAAEAEKPE SSVSSATGDG NLSPSQPPLK NLLSLLKAYY 600
ALNAQPSAEE LSKIADSVNL PLDVVKKWFE KMQAGQISVQ SSEPSSPEPG KVNIPAKNND 660
QPQSANANEP QDSTVNLQSP LKMTNSPVLP VGSTTNGSRS STPSPSPLNL SSSRNTQGYL 720
YTAEGAQEEP QVEPLDLSLP KQQGELLERS TITSVYQNSV YSVQEEPLNL SCAKKEPQKD 780
SCVTDSEPVV NVIPPSANPI NIAIPTVTAQ LPTIVAIADQ NSVPCLRALA ANKQTILIPQ 840
VAYTYSTTVS PAVQEPPLKV IQPNGNQDER QDTSSEGVSN VEDQNDSDST PPKKKMRKTE 900
NGMYACDLCD KIFQKSSSLL RHKYEHTGKR PHECGICKKA FKHKHHLIEH MRLHSGEKPY 960
QCDKCGKRFS HSGSYSQHMN HRYSYCKREA EERDSTEQEE AGPEILSNEH VGARASPSQG 1020
DSDERESLTR EEDEDSEKEE EEEDKEMEEL QEEKECEKPQ GDEEEEEEEE EVEEEEVEEA 1080
ENEGEEAKTE GLMKDDRAES QASSLGQKVG ESSEQVSEEK TNEA 1124

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologZEB1477966A0A5F4BPF2Canis lupus familiarisPredictionMore>>
1:1 orthologZEB1106502734A0A452EVD0Capra hircusPredictionMore>>
1:1 orthologZEB16935P37275Homo sapiensPredictionMore>>
1:1 orthologZeb121417Q64318CPO,CLPE11.5, E12.5, E13.5, E14.5Mus musculusPublicationMore>>
1:1 orthologZEB1450387K7CJ20Pan troglodytesPredictionMore>>
1:1 orthologZeb1F8WG35Rattus norvegicusPredictionMore>>
1:1 orthologzeb1bF1QPM7Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specificIDA
GO:0003682 chromatin bindingIEA
GO:0003700 DNA-binding transcription factor activityTAS
GO:0003713 transcription coactivator activityTAS
GO:0003714 transcription corepressor activityTAS
GO:0005515 protein bindingIPI
GO:0008270 zinc ion bindingTAS
GO:0070888 E-box bindingISS

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0006357 regulation of transcription by RNA polymerase IITAS
GO:0007389 pattern specification processIEA
GO:0007417 central nervous system developmentIEA
GO:0008285 negative regulation of cell population proliferationIEA
GO:0010464 regulation of mesenchymal cell proliferationIEA
GO:0017015 regulation of transforming growth factor beta receptor signaling pathwayIEA
GO:0019221 cytokine-mediated signaling pathwayTAS
GO:0033081 regulation of T cell differentiation in thymusIEA
GO:0045602 negative regulation of endothelial cell differentiationIMP
GO:0045666 positive regulation of neuron differentiationISS
GO:0045892 negative regulation of transcription, DNA-templatedIMP
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIEA
GO:0048596 embryonic camera-type eye morphogenesisIEA
GO:0048704 embryonic skeletal system morphogenesisIEA
GO:0048752 semicircular canal morphogenesisIEA
GO:0051150 regulation of smooth muscle cell differentiationIEA
GO:0051216 cartilage developmentIEA
GO:0071230 cellular response to amino acid stimulusIEA
GO:0090103 cochlea morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005829 cytosolIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1280215 Cytokine Signaling in Immune systemTAS
R-HSA-168256 Immune SystemTAS
R-HSA-449147 Signaling by InterleukinsTAS
R-HSA-6785807 Interleukin-4 and Interleukin-13 signalingTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0010 Activator
KW-0025 Alternative splicing
KW-1212 Corneal dystrophy
KW-0221 Differentiation
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0371 Homeobox
KW-1017 Isopeptide bond
KW-0479 Metal-binding
KW-0524 Neurogenesis
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR008598 Di19_Zn_binding_dom
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

PROSITE

PROSITE ID PROSITE Term
PS00028 ZINC_FINGER_C2H2_1
PS50157 ZINC_FINGER_C2H2_2

Pfam

Pfam ID Pfam Term
PF00096 zf-C2H2
PF05605 zf-Di19

Protein-protein interaction

Protein-miRNA interaction