Gene: CDKN1C

Basic information

Tag Content
Uniprot ID P49918
Entrez ID 1028
Genbank protein ID BAA11015.1; AAH67842.1; AAB05896.1; BAA11014.1; AAA85095.1;
Genbank nucleotide ID XM_017017088.1; NM_001122630.1; NM_001122631.1; NM_000076.2;
Ensembl protein ID ENSP00000411257; ENSP00000411552; ENSP00000413720;
Ensembl nucleotide ID ENSG00000129757
Gene name Cyclin-dependent kinase inhibitor 1C
Gene symbol CDKN1C
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Potent tight-binding inhibitor of several G1 cyclin/CDK complexes (cyclin E-CDK2, cyclin D2-CDK4, and cyclin A-CDK2) and, to lesser extent, of the mitotic cyclin B-CDC2. Negative regulator of cell proliferation. May play a role in maintenance of the non-proliferative state throughout life.
Sequence
MSDASLRSTS TMERLVARGT FPVLVRTSAC RSLFGPVDHE ELSRELQARL AELNAEDQNR 60
WDYDFQQDMP LRGPGRLQWT EVDSDSVPAF YRETVQVGRC RLLLAPRPVA VAVAVSPPLE 120
PAAESLDGLE EAPEQLPSVP VPAPASTPPP VPVLAPAPAP APAPVAAPVA APVAVAVLAP 180
APAPAPAPAP APAPVAAPAP APAPAPAPAP APAPAPDAAP QESAEQGANQ GQRGQEPLAD 240
QLHSGISGRP AAGTAAASAN GAAIKKLSGP LISDFFAKRK RSAPEKSSGD VPAPCPSPSA 300
APGVGSVEQT PRKRLR 316

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCDKN1CF1N786Bos taurusPredictionMore>>
1:1 orthologCDKN1CA0A452ECM9Capra hircusPredictionMore>>
1:1 orthologCDKN1C1028P49918Homo sapiensPredictionMore>>
1:1 orthologCdkn1c12577P49919CPOE14.5, E17.5Mus musculusPublicationMore>>
1:1 orthologCDKN1CA0A2I3TME0Pan troglodytesPredictionMore>>
1:1 orthologCDKN1CA0A287A9C4Sus scrofaPredictionMore>>
1:1 orthologCdkn1c246060Q69DC1Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004860 protein kinase inhibitor activityIMP
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activityIEA
GO:0005515 protein bindingIPI
GO:0044877 protein-containing complex bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0007050 cell cycle arrestIEA
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathwayIMP
GO:0033673 negative regulation of kinase activityIDA
GO:0042326 negative regulation of phosphorylationIDA
GO:0042326 negative regulation of phosphorylationIBA
GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activityIBA
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045893 positive regulation of transcription, DNA-templatedIGI
GO:0045930 negative regulation of mitotic cell cycleIBA
GO:0050680 negative regulation of epithelial cell proliferationIMP
GO:1904030 negative regulation of cyclin-dependent protein kinase activityIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIDA
GO:0005737 cytoplasmIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1640170 Cell CycleTAS
R-HSA-453279 Mitotic G1 phase and G1/S transitionTAS
R-HSA-69231 Cyclin D associated events in G1TAS
R-HSA-69236 G1 PhaseTAS
R-HSA-69278 Cell Cycle, MitoticTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0131 Cell cycle
KW-0225 Disease mutation
KW-0488 Methylation
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0649 Protein kinase inhibitor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0043 Tumor suppressor

Interpro

InterPro ID InterPro Term
IPR003175 CDI
IPR029842 CDKN1C

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF02234 CDI

Protein-protein interaction

Protein-miRNA interaction