Gene: SERPINH1

Basic information

Tag Content
Uniprot ID P50454; B3KVJ3; P29043; Q5XPB4; Q6NSJ6; Q8IY96; Q9NP88;
Entrez ID 871
Genbank protein ID BAA11829.1; AAU95378.1; CAA43795.1; AAP93914.1; BAA96789.1; AAP35758.1; EAW74974.1; AAH14623.1; AAH36298.2; AAH70087.1; BAA96788.1; BAG53805.1;
Genbank nucleotide ID NM_001207014.1; XM_011545327.1; NM_001235.3;
Ensembl protein ID ENSP00000350894; ENSP00000434657; ENSP00000434412;
Ensembl nucleotide ID ENSG00000149257
Gene name Serpin H1
Gene symbol SERPINH1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Binds specifically to collagen. Could be involved as a chaperone in the biosynthetic pathway of collagen.
Sequence
MRSLLLLSAF CLLEAALAAE VKKPAAAAAP GTAEKLSPKA ATLAERSAGL AFSLYQAMAK 60
DQAVENILVS PVVVASSLGL VSLGGKATTA SQAKAVLSAE QLRDEEVHAG LGELLRSLSN 120
STARNVTWKL GSRLYGPSSV SFADDFVRSS KQHYNCEHSK INFRDKRSAL QSINEWAAQT 180
TDGKLPEVTK DVERTDGALL VNAMFFKPHW DEKFHHKMVD NRGFMVTRSY TVGVMMMHRT 240
GLYNYYDDEK EKLQIVEMPL AHKLSSLIIL MPHHVEPLER LEKLLTKEQL KIWMGKMQKK 300
AVAISLPKGV VEVTHDLQKH LAGLGLTEAI DKNKADLSRM SGKKDLYLAS VFHATAFELD 360
TDGNPFDQDI YGREELRSPK LFYADHPFIF LVRDTQSGSL LFIGRLVRPK GDKMRDEL 418

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologSERPINH1510850Q2KJH6Bos taurusPredictionMore>>
1:1 orthologSERPINH1485187E2RHY7Canis lupus familiarisPredictionMore>>
1:1 orthologSERPINH1102171265A0A452DNR6Capra hircusPredictionMore>>
1:1 orthologSERPINH1F6PWV8Equus caballusPredictionMore>>
1:1 orthologSERPINH1871P50454Homo sapiensPredictionMore>>
1:1 orthologSerpinh112406P19324CPOMus musculusPublicationMore>>
1:1 orthologSERPINH1466899G2HFZ7Pan troglodytesPredictionMore>>
1:1 orthologSERPINH1A0A286ZRU9Sus scrofaPredictionMore>>
1:1 orthologSerpinh1Q5RJR9Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003723 RNA bindingHDA
GO:0004867 serine-type endopeptidase inhibitor activityIBA
GO:0005518 collagen bindingNAS
GO:0051082 unfolded protein bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0003433 chondrocyte development involved in endochondral bone morphogenesisIEA
GO:0006986 response to unfolded proteinTAS
GO:0010951 negative regulation of endopeptidase activityIBA
GO:0030199 collagen fibril organizationIBA
GO:0032964 collagen biosynthetic processIEA
GO:0051604 protein maturationIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005615 extracellular spaceIEA
GO:0005783 endoplasmic reticulumIDA
GO:0005783 endoplasmic reticulumIBA
GO:0005783 endoplasmic reticulumNAS
GO:0005788 endoplasmic reticulum lumenTAS
GO:0005793 endoplasmic reticulum-Golgi intermediate compartmentIDA
GO:0045121 membrane raftIDA
GO:0062023 collagen-containing extracellular matrixHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474290 Collagen formationTAS
R-HSA-1650814 Collagen biosynthesis and modifying enzymesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0007 Acetylation
KW-0143 Chaperone
KW-0256 Endoplasmic reticulum
KW-0325 Glycoprotein
KW-1065 Osteogenesis imperfecta
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0732 Signal
KW-0346 Stress response

Interpro

InterPro ID InterPro Term
IPR023795 Serpin_CS
IPR023796 Serpin_dom
IPR000215 Serpin_fam
IPR033830 Serpin_H1_domain
IPR036186 Serpin_sf
IPR042178 Serpin_sf_1
IPR042185 Serpin_sf_2
IPR033547 SERPINH1

PROSITE

PROSITE ID PROSITE Term
PS00014 ER_TARGET
PS00284 SERPIN

Pfam

Pfam ID Pfam Term
PF00079 Serpin

Protein-protein interaction

Protein-miRNA interaction