Gene: MMP16

Basic information

Tag Content
Uniprot ID P51512; B2RAN7; Q14824; Q52H48;
Entrez ID 4325
Genbank protein ID AAH69500.1; BAG36934.1; AAH75004.1; BAA22226.1; BAA12023.1; AAH75005.1; BAA12022.1; EAW91651.1; BAA23742.1; AAX84515.1;
Genbank nucleotide ID NM_005941.4
Ensembl protein ID ENSP00000286614
Ensembl nucleotide ID ENSG00000156103
Gene name Matrix metalloproteinase-16
Gene symbol MMP16
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Endopeptidase that degrades various components of the extracellular matrix, such as collagen type III and fibronectin. Activates progelatinase A. Involved in the matrix remodeling of blood vessels. Isoform short cleaves fibronectin and also collagen type III, but at lower rate. It has no effect on type I, II, IV and V collagen. However, upon interaction with CSPG4, it may be involved in degradation and invasion of type I collagen by melanoma cells.
Sequence
MILLTFSTGR RLDFVHHSGV FFLQTLLWIL CATVCGTEQY FNVEVWLQKY GYLPPTDPRM 60
SVLRSAETMQ SALAAMQQFY GINMTGKVDR NTIDWMKKPR CGVPDQTRGS SKFHIRRKRY 120
ALTGQKWQHK HITYSIKNVT PKVGDPETRK AIRRAFDVWQ NVTPLTFEEV PYSELENGKR 180
DVDITIIFAS GFHGDSSPFD GEGGFLAHAY FPGPGIGGDT HFDSDEPWTL GNPNHDGNDL 240
FLVAVHELGH ALGLEHSNDP TAIMAPFYQY METDNFKLPN DDLQGIQKIY GPPDKIPPPT 300
RPLPTVPPHR SIPPADPRKN DRPKPPRPPT GRPSYPGAKP NICDGNFNTL AILRREMFVF 360
KDQWFWRVRN NRVMDGYPMQ ITYFWRGLPP SIDAVYENSD GNFVFFKGNK YWVFKDTTLQ 420
PGYPHDLITL GSGIPPHGID SAIWWEDVGK TYFFKGDRYW RYSEEMKTMD PGYPKPITVW 480
KGIPESPQGA FVHKENGFTY FYKGKEYWKF NNQILKVEPG YPRSILKDFM GCDGPTDRVK 540
EGHSPPDDVD IVIKLDNTAS TVKAIAIVIP CILALCLLVL VYTVFQFKRK GTPRHILYCK 600
RSMQEWV 607

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologMMP16282886F1N797Bos taurusPredictionMore>>
1:1 orthologMMP16487036F1PLV8Canis lupus familiarisPredictionMore>>
1:1 orthologMMP16A0A452EG47Capra hircusPredictionMore>>
1:1 orthologMMP164325P51512Homo sapiensPredictionMore>>
1:1 orthologMmp1617389Q9WTR0CPOMus musculusPublicationMore>>
1:1 orthologMMP16A0A2I3SEA5Pan troglodytesPredictionMore>>
1:1 orthologMMP16100153257A0A287AKC1Sus scrofaPredictionMore>>
1:1 orthologMMP16100101605G1T0W4Oryctolagus cuniculusPredictionMore>>
1:1 orthologMmp16F1M7F5Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004222 metalloendopeptidase activityIBA
GO:0004222 metalloendopeptidase activityIDA
GO:0008047 enzyme activator activityTAS
GO:0008270 zinc ion bindingIDA
GO:0070006 metalloaminopeptidase activityTAS
GO:0070006 metalloaminopeptidase activityIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0001501 skeletal system developmentIBA
GO:0001958 endochondral ossificationIEA
GO:0006508 proteolysisTAS
GO:0006508 proteolysisIDA
GO:0016485 protein processingIDA
GO:0019538 protein metabolic processTAS
GO:0022617 extracellular matrix disassemblyTAS
GO:0030198 extracellular matrix organizationIBA
GO:0030574 collagen catabolic processIBA
GO:0035988 chondrocyte proliferationIEA
GO:0043085 positive regulation of catalytic activityIEA
GO:0048701 embryonic cranial skeleton morphogenesisIEA
GO:0097094 craniofacial suture morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005615 extracellular spaceIBA
GO:0005796 Golgi lumenTAS
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneIBA
GO:0005887 integral component of plasma membraneIDA
GO:0009986 cell surfaceIEA
GO:0031012 extracellular matrixIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474228 Degradation of the extracellular matrixTAS
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1592389 Activation of Matrix MetalloproteinasesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0106 Calcium
KW-1003 Cell membrane
KW-0165 Cleavage on pair of basic residues
KW-0177 Collagen degradation
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0378 Hydrolase
KW-0472 Membrane
KW-0479 Metal-binding
KW-0482 Metalloprotease
KW-0645 Protease
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0862 Zinc
KW-0865 Zymogen

Interpro

InterPro ID InterPro Term
IPR000585 Hemopexin-like_dom
IPR036375 Hemopexin-like_dom_sf
IPR018487 Hemopexin-like_repeat
IPR018486 Hemopexin_CS
IPR033739 M10A_MMP
IPR024079 MetalloPept_cat_dom_sf
IPR028697 MMP16
IPR001818 Pept_M10_metallopeptidase
IPR021190 Pept_M10A
IPR021805 Pept_M10A_metallopeptidase_C
IPR021158 Pept_M10A_Zn_BS
IPR006026 Peptidase_Metallo
IPR002477 Peptidoglycan-bd-like
IPR036365 PGBD-like_sf

PROSITE

PROSITE ID PROSITE Term
PS00546 CYSTEINE_SWITCH
PS00024 HEMOPEXIN
PS51642 HEMOPEXIN_2
PS00142 ZINC_PROTEASE

Pfam

Pfam ID Pfam Term
PF11857 DUF3377
PF00045 Hemopexin
PF00413 Peptidase_M10
PF01471 PG_binding_1

Protein-protein interaction

Protein-miRNA interaction