Gene: NDST1

Basic information

Tag Content
Uniprot ID P52848; Q96E57;
Entrez ID 3340
Genbank protein ID AAA75281.1; AAC27354.1; AAH12888.1; AAA67765.1;
Genbank nucleotide ID NM_001543.4; XM_017009430.1; XM_017009428.1; NM_001301063.1; XM_017009429.1; XM_006714783.1; XM_017009431.1;
Ensembl protein ID ENSP00000261797
Ensembl nucleotide ID ENSG00000070614
Gene name Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Gene symbol NDST1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Essential bifunctional enzyme that catalyzes both the N-deacetylation and the N-sulfation of glucosamine (GlcNAc) of the glycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcA disaccharide repeating sugar backbone to make N-sulfated heparosan, a prerequisite substrate for later modifications in heparin biosynthesis (PubMed:10758005, PubMed:12634318). Plays a role in determining the extent and pattern of sulfation of heparan sulfate. Compared to other NDST enzymes, its presence is absolutely required. Participates in biosynthesis of heparan sulfate that can ultimately serve as L-selectin ligands, thereby playing a role in inflammatory response (PubMed:10758005, PubMed:12634318). Required for the exosomal release of SDCBP, CD63 and syndecan (PubMed:22660413).
Sequence
MPALACLRRL CRHVSPQAVL FLLFIFCLFS VFISAYYLYG WKRGLEPSAD APEPDCGDPP 60
PVAPSRLLPL KPVQAATPSR TDPLVLVFVE SLYSQLGQEV VAILESSRFK YRTEIAPGKG 120
DMPTLTDKGR GRFALIIYEN ILKYVNLDAW NRELLDKYCV AYGVGIIGFF KANENSLLSA 180
QLKGFPLFLH SNLGLKDCSI NPKSPLLYVT RPSEVEKGVL PGEDWTVFQS NHSTYEPVLL 240
AKTRSSESIP HLGADAGLHA ALHATVVQDL GLHDGIQRVL FGNNLNFWLH KLVFVDAVAF 300
LTGKRLSLPL DRYILVDIDD IFVGKEGTRM KVEDVKALFD TQNELRAHIP NFTFNLGYSG 360
KFFHTGTNAE DAGDDLLLSY VKEFWWFPHM WSHMQPHLFH NQSVLAEQMA LNKKFAVEHG 420
IPTDMGYAVA PHHSGVYPVH VQLYEAWKQV WSIRVTSTEE YPHLKPARYR RGFIHNGIMV 480
LPRQTCGLFT HTIFYNEYPG GSSELDKIIN GGELFLTVLL NPISIFMTHL SNYGNDRLGL 540
YTFKHLVRFL HSWTNLRLQT LPPVQLAQKY FQIFSEEKDP LWQDPCEDKR HKDIWSKEKT 600
CDRFPKLLII GPQKTGTTAL YLFLGMHPDL SSNYPSSETF EEIQFFNGHN YHKGIDWYME 660
FFPIPSNTTS DFYFEKSANY FDSEVAPRRA AALLPKAKVL TILINPADRA YSWYQHQRAH 720
DDPVALKYTF HEVITAGSDA SSKLRALQNR CLVPGWYATH IERWLSAYHA NQILVLDGKL 780
LRTEPAKVMD MVQKFLGVTN TIDYHKTLAF DPKKGFWCQL LEGGKTKCLG KSKGRKYPEM 840
DLDSRAFLKD YYRDHNIELS KLLYKMGQTL PTWLREDLQN TR 882

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologNDST1514172E1BCG5Bos taurusPredictionMore>>
1:1 orthologNDST1102174299A0A452EZE5Capra hircusPredictionMore>>
1:1 orthologNDST13340P52848Homo sapiensPredictionMore>>
1:1 orthologNdst115531Q3UHN9CPOMus musculusPublicationMore>>
1:1 orthologNDST1462194H2R584Pan troglodytesPredictionMore>>
1:1 orthologNDST1M3V841Sus scrofaPredictionMore>>
1:1 orthologNDST1100344304G1T1F7Oryctolagus cuniculusPredictionMore>>
1:1 orthologNdst129633Q02353Rattus norvegicusPredictionMore>>
1:1 orthologndst1b570459A0A0R4IR84Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activityIBA
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activityIDA
GO:0019213 deacetylase activityIBA
GO:0042328 heparan sulfate N-acetylglucosaminyltransferase activityIBA
GO:0042328 heparan sulfate N-acetylglucosaminyltransferase activityIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0003279 cardiac septum developmentIEA
GO:0006024 glycosaminoglycan biosynthetic processTAS
GO:0006477 protein sulfationIEA
GO:0006954 inflammatory responseIEA
GO:0007585 respiratory gaseous exchange by respiratory systemIEA
GO:0008543 fibroblast growth factor receptor signaling pathwayIEA
GO:0015012 heparan sulfate proteoglycan biosynthetic processIDA
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processIBA
GO:0015014 heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic processIDA
GO:0030210 heparin biosynthetic processIEA
GO:0030900 forebrain developmentIEA
GO:0030901 midbrain developmentIEA
GO:0035904 aorta developmentIEA
GO:0043410 positive regulation of MAPK cascadeIEA
GO:0045880 positive regulation of smoothened signaling pathwayIEA
GO:0048702 embryonic neurocranium morphogenesisIEA
GO:0048703 embryonic viscerocranium morphogenesisIEA
GO:0060976 coronary vasculature developmentIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000139 Golgi membraneTAS
GO:0005794 Golgi apparatusIBA
GO:0016021 integral component of membraneIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1430728 MetabolismTAS
R-HSA-1630316 Glycosaminoglycan metabolismTAS
R-HSA-1638091 Heparan sulfate/heparin (HS-GAG) metabolismTAS
R-HSA-2022928 HS-GAG biosynthesisTAS
R-HSA-71387 Metabolism of carbohydratesTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0333 Golgi apparatus
KW-0378 Hydrolase
KW-0395 Inflammatory response
KW-0472 Membrane
KW-0991 Mental retardation
KW-0511 Multifunctional enzyme
KW-1185 Reference proteome
KW-0735 Signal-anchor
KW-0808 Transferase
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR021930 Heparan_SO4_deacetylase
IPR037359 NST/OST
IPR027417 P-loop_NTPase
IPR000863 Sulfotransferase_dom

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF12062 HSNSD
PF00685 Sulfotransfer_1

Protein-protein interaction

Protein-miRNA interaction