Gene: GBX2

Basic information

Tag Content
Uniprot ID P52951; B2RPH7; O43833; Q53RX5; Q9Y5Y1;
Entrez ID 2637
Genbank protein ID EAW71084.1; AAC03241.1; AAI37450.1; AAX93240.1; AAI37449.1; AAA17406.1; AAD39907.1;
Genbank nucleotide ID NM_001485.3
Ensembl protein ID ENSP00000302251
Ensembl nucleotide ID ENSG00000168505
Gene name Homeobox protein GBX-2
Gene symbol GBX2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description May act as a transcription factor for cell pluripotency and differentiation in the embryo.
Sequence
MSAAFPPSLM MMQRPLGSST AFSIDSLIGS PPQPSPGHFV YTGYPMFMPY RPVVLPPPPP 60
PPPALPQAAL QPALPPAHPH HQIPSLPTGF CSSLAQGMAL TSTLMATLPG GFSASPQHQE 120
AAAARKFAPQ PLPGGGNFDK AEALQADAED GKGFLAKEGS LLAFSAAETV QASLVGAVRG 180
QGKDESKVED DPKGKEESFS LESDVDYSSD DNLTGQAAHK EEDPGHALEE TPPSSGAAGS 240
TTSTGKNRRR RTAFTSEQLL ELEKEFHCKK YLSLTERSQI AHALKLSEVQ VKIWFQNRRA 300
KWKRVKAGNA NSKTGEPSRN PKIVVPIPVH VSRFAIRSQH QQLEQARP 348

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologGBX2486174E2RC01Canis lupus familiarisPredictionMore>>
1:1 orthologGBX2102174804A0A452EY65Capra hircusPredictionMore>>
1:1 orthologGBX22637P52951Homo sapiensPredictionMore>>
1:1 orthologGbx214472P48031CPOMus musculusPublicationMore>>
1:1 orthologGBX2470689H2QJN8Pan troglodytesPredictionMore>>
1:1 orthologGBX2100514608F1SM11Sus scrofaPredictionMore>>
1:1 orthologGBX2100353889G1T4M0Oryctolagus cuniculusPredictionMore>>
1:1 orthologGbx2114500G3V8J6Rattus norvegicusPredictionMore>>
1:1 orthologgbx2245948Q8QGU1Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIBA
GO:0000979 RNA polymerase II core promoter sequence-specific DNA bindingIEA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001085 RNA polymerase II transcription factor bindingIEA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIBA
GO:0003700 DNA-binding transcription factor activityTAS

GO:Biological Process

GO ID GO Term Evidence
GO:0001569 branching involved in blood vessel morphogenesisIEA
GO:0001755 neural crest cell migrationIEA
GO:0007399 nervous system developmentTAS
GO:0007411 axon guidanceIEA
GO:0021549 cerebellum developmentIBA
GO:0021555 midbrain-hindbrain boundary morphogenesisIEA
GO:0021568 rhombomere 2 developmentIEA
GO:0021794 thalamus developmentIEA
GO:0021884 forebrain neuron developmentIEA
GO:0021930 cerebellar granule cell precursor proliferationIEA
GO:0030902 hindbrain developmentIBA
GO:0042472 inner ear morphogenesisIEA
GO:0045944 positive regulation of transcription by RNA polymerase IIIEA
GO:0048483 autonomic nervous system developmentIEA
GO:0051960 regulation of nervous system developmentIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusIBA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0238 DNA-binding
KW-0371 Homeobox
KW-0539 Nucleus
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR042982 GBX-1/2
IPR031250 GBX-2
IPR009057 Homeobox-like_sf
IPR017970 Homeobox_CS
IPR001356 Homeobox_dom
IPR020479 Homeobox_metazoa

PROSITE

PROSITE ID PROSITE Term
PS00027 HOMEOBOX_1
PS50071 HOMEOBOX_2

Pfam

Pfam ID Pfam Term
PF00046 Homeodomain

Protein-miRNA interaction