Gene: BLM

Basic information

Tag Content
Uniprot ID P54132; Q52M96;
Entrez ID 641
Genbank protein ID AAI15033.1; AAH93622.1; AAA87850.1; AAI01568.1; AAI15031.1; AAW62255.1;
Genbank nucleotide ID NM_001287247.1; NM_001287246.1; NM_000057.3; NM_001287248.1;
Ensembl protein ID ENSP00000347232
Ensembl nucleotide ID ENSG00000197299
Gene name Bloom syndrome protein
Gene symbol BLM
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CL/P
Developmental stage
Data sources Manually collected
Reference 25045080
Functional description ATP-dependent DNA helicase that unwinds single- and double-stranded DNA in a 3'-5' direction (PubMed:9388193, PubMed:24816114, PubMed:25901030). Participates in DNA replication and repair (PubMed:12019152, PubMed:21325134, PubMed:23509288). Involved in 5'-end resection of DNA during double-strand break (DSB) repair: unwinds DNA and recruits DNA2 which mediates the cleavage of 5'-ssDNA (PubMed:21325134). Negatively regulates sister chromatid exchange (SCE) (PubMed:25901030). Stimulates DNA 4-way junction branch migration and DNA Holliday junction dissolution (PubMed:25901030). Binds single-stranded DNA (ssDNA), forked duplex DNA and DNA Holliday junction (PubMed:20639533, PubMed:24257077, PubMed:25901030).
Sequence
MAAVPQNNLQ EQLERHSART LNNKLSLSKP KFSGFTFKKK TSSDNNVSVT NVSVAKTPVL 60
RNKDVNVTED FSFSEPLPNT TNQQRVKDFF KNAPAGQETQ RGGSKSLLPD FLQTPKEVVC 120
TTQNTPTVKK SRDTALKKLE FSSSPDSLST INDWDDMDDF DTSETSKSFV TPPQSHFVRV 180
STAQKSKKGK RNFFKAQLYT TNTVKTDLPP PSSESEQIDL TEEQKDDSEW LSSDVICIDD 240
GPIAEVHINE DAQESDSLKT HLEDERDNSE KKKNLEEAEL HSTEKVPCIE FDDDDYDTDF 300
VPPSPEEIIS ASSSSSKCLS TLKDLDTSDR KEDVLSTSKD LLSKPEKMSM QELNPETSTD 360
CDARQISLQQ QLIHVMEHIC KLIDTIPDDK LKLLDCGNEL LQQRNIRRKL LTEVDFNKSD 420
ASLLGSLWRY RPDSLDGPME GDSCPTGNSM KELNFSHLPS NSVSPGDCLL TTTLGKTGFS 480
ATRKNLFERP LFNTHLQKSF VSSNWAETPR LGKKNESSYF PGNVLTSTAV KDQNKHTASI 540
NDLERETQPS YDIDNFDIDD FDDDDDWEDI MHNLAASKSS TAAYQPIKEG RPIKSVSERL 600
SSAKTDCLPV SSTAQNINFS ESIQNYTDKS AQNLASRNLK HERFQSLSFP HTKEMMKIFH 660
KKFGLHNFRT NQLEAINAAL LGEDCFILMP TGGGKSLCYQ LPACVSPGVT VVISPLRSLI 720
VDQVQKLTSL DIPATYLTGD KTDSEATNIY LQLSKKDPII KLLYVTPEKI CASNRLISTL 780
ENLYERKLLA RFVIDEAHCV SQWGHDFRQD YKRMNMLRQK FPSVPVMALT ATANPRVQKD 840
ILTQLKILRP QVFSMSFNRH NLKYYVLPKK PKKVAFDCLE WIRKHHPYDS GIIYCLSRRE 900
CDTMADTLQR DGLAALAYHA GLSDSARDEV QQKWINQDGC QVICATIAFG MGIDKPDVRF 960
VIHASLPKSV EGYYQESGRA GRDGEISHCL LFYTYHDVTR LKRLIMMEKD GNHHTRETHF 1020
NNLYSMVHYC ENITECRRIQ LLAYFGENGF NPDFCKKHPD VSCDNCCKTK DYKTRDVTDD 1080
VKSIVRFVQE HSSSQGMRNI KHVGPSGRFT MNMLVDIFLG SKSAKIQSGI FGKGSAYSRH 1140
NAERLFKKLI LDKILDEDLY INANDQAIAY VMLGNKAQTV LNGNLKVDFM ETENSSSVKK 1200
QKALVAKVSQ REEMVKKCLG ELTEVCKSLG KVFGVHYFNI FNTVTLKKLA ESLSSDPEVL 1260
LQIDGVTEDK LEKYGAEVIS VLQKYSEWTS PAEDSSPGIS LSSSRGPGRS AAEELDEEIP 1320
VSSHYFASKT RNERKRKKMP ASQRSKRRKT ASSGSKAKGG SATCRKISSK TKSSSIIGSS 1380
SASHTSQATS GANSKLGIMA PPKPINRPFL KPSYAFS 1417

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologBLM100685609E2RS76Canis lupus familiarisPredictionMore>>
1:1 orthologBLMA0A452E3H5Capra hircusPredictionMore>>
1:1 orthologBLM641P54132CL/PHomo sapiensPublicationMore>>
1:1 orthologBlm12144O88700Mus musculusPredictionMore>>
1:1 orthologBLMA0A2I3SP55Pan troglodytesPredictionMore>>
1:1 orthologBLMA0A5G2R540Sus scrofaPredictionMore>>
1:1 orthologBLM100345123G1T6H2Oryctolagus cuniculusPredictionMore>>
1:1 orthologBlmD3ZQW1Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000400 four-way junction DNA bindingIDA
GO:0000403 Y-form DNA bindingIDA
GO:0000405 bubble DNA bindingIDA
GO:0002039 p53 bindingIPI
GO:0003677 DNA bindingIDA
GO:0003678 DNA helicase activityIDA
GO:0003678 DNA helicase activityIMP
GO:0003697 single-stranded DNA bindingIDA
GO:0004386 helicase activityIDA
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIDA
GO:0008094 DNA-dependent ATPase activityIDA
GO:0008270 zinc ion bindingIDA
GO:0009378 four-way junction helicase activityIDA
GO:0009378 four-way junction helicase activityIBA
GO:0016887 ATPase activityIDA
GO:0036310 annealing helicase activityIDA
GO:0042802 identical protein bindingIDA
GO:0042803 protein homodimerization activityIDA
GO:0043138 3'-5' DNA helicase activityIBA
GO:0051880 G-quadruplex DNA bindingIDA
GO:0061749 forked DNA-dependent helicase activityIDA
GO:0061821 telomeric D-loop bindingIDA
GO:0061849 telomeric G-quadruplex DNA bindingIC
GO:1905773 8-hydroxy-2'-deoxyguanosine DNA bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activityIMP
GO:0000723 telomere maintenanceIBA
GO:0000724 double-strand break repair via homologous recombinationNAS
GO:0000724 double-strand break repair via homologous recombinationIBA
GO:0000729 DNA double-strand break processingIDA
GO:0000733 DNA strand renaturationIEA
GO:0006260 DNA replicationISS
GO:0006260 DNA replicationTAS
GO:0006268 DNA unwinding involved in DNA replicationIBA
GO:0006281 DNA repairIBA
GO:0006281 DNA repairNAS
GO:0006310 DNA recombinationNAS
GO:0006310 DNA recombinationIBA
GO:0006974 cellular response to DNA damage stimulusIMP
GO:0006974 cellular response to DNA damage stimulusIDA
GO:0007095 mitotic G2 DNA damage checkpointIDA
GO:0010165 response to X-rayIDA
GO:0031297 replication fork processingIDA
GO:0032508 DNA duplex unwindingIDA
GO:0032508 DNA duplex unwindingIBA
GO:0044806 G-quadruplex DNA unwindingISS
GO:0044806 G-quadruplex DNA unwindingIDA
GO:0044806 G-quadruplex DNA unwindingIBA
GO:0045893 positive regulation of transcription, DNA-templatedIDA
GO:0045910 negative regulation of DNA recombinationIMP
GO:0048478 replication fork protectionNAS
GO:0051259 protein complex oligomerizationIDA
GO:0051260 protein homooligomerizationIDA
GO:0051782 negative regulation of cell divisionIMP
GO:0061820 telomeric D-loop disassemblyIDA
GO:0071479 cellular response to ionizing radiationIDA
GO:0072711 cellular response to hydroxyureaIDA
GO:0072757 cellular response to camptothecinIDA
GO:0090329 regulation of DNA-dependent DNA replicationIMP
GO:0090656 t-circle formationTAS
GO:1901796 regulation of signal transduction by p53 class mediatorTAS

GO:Cellular Component

GO ID GO Term Evidence
GO:0000228 nuclear chromosomeIDA
GO:0000800 lateral elementIDA
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005657 replication forkISS
GO:0005694 chromosomeIBA
GO:0005730 nucleolusIDA
GO:0005737 cytoplasmIBA
GO:0005829 cytosolIDA
GO:0016363 nuclear matrixIDA
GO:0016605 PML bodyIDA
GO:0032991 protein-containing complexIDA
GO:0000781 chromosome, telomeric regionIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474165 ReproductionIEA
R-HSA-1500620 MeiosisIEA
R-HSA-1640170 Cell CycleTAS
R-HSA-1640170 Cell CycleIEA
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-2990846 SUMOylationTAS
R-HSA-3108214 SUMOylation of DNA damage response and repair proteinsTAS
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteinsTAS
R-HSA-3700989 Transcriptional Regulation by TP53TAS
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-5633007 Regulation of TP53 ActivityTAS
R-HSA-5685938 HDR through Single Strand Annealing (SSA)TAS
R-HSA-5685942 HDR through Homologous Recombination (HRR)TAS
R-HSA-5693532 DNA Double-Strand Break RepairTAS
R-HSA-5693537 Resolution of D-Loop StructuresTAS
R-HSA-5693538 Homology Directed RepairTAS
R-HSA-5693554 Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)TAS
R-HSA-5693567 HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA)TAS
R-HSA-5693568 Resolution of D-loop Structures through Holliday Junction IntermediatesTAS
R-HSA-5693579 Homologous DNA Pairing and Strand ExchangeTAS
R-HSA-5693607 Processing of DNA double-strand break endsTAS
R-HSA-5693616 Presynaptic phase of homologous DNA pairing and strand exchangeTAS
R-HSA-597592 Post-translational protein modificationTAS
R-HSA-6804756 Regulation of TP53 Activity through PhosphorylationTAS
R-HSA-69473 G2/M DNA damage checkpointTAS
R-HSA-69481 G2/M CheckpointsTAS
R-HSA-69620 Cell Cycle CheckpointsTAS
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-73894 DNA RepairTAS
R-HSA-74160 Gene expression (Transcription)TAS
R-HSA-912446 Meiotic recombinationIEA

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0067 ATP-binding
KW-0225 Disease mutation
KW-0227 DNA damage
KW-0234 DNA repair
KW-0235 DNA replication
KW-0238 DNA-binding
KW-0242 Dwarfism
KW-0347 Helicase
KW-0378 Hydrolase
KW-1017 Isopeptide bond
KW-0479 Metal-binding
KW-0547 Nucleotide-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0832 Ubl conjugation
KW-0862 Zinc

Interpro

InterPro ID InterPro Term
IPR012532 BDHCT
IPR032439 BDHCT_assoc
IPR032437 BLM_N
IPR011545 DEAD/DEAH_box_helicase_dom
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR004589 DNA_helicase_ATP-dep_RecQ
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR010997 HRDC-like_sf
IPR002121 HRDC_dom
IPR027417 P-loop_NTPase
IPR032284 RecQ_Zn-bd
IPR018982 RQC_domain
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf

PROSITE

PROSITE ID PROSITE Term
PS00690 DEAH_ATP_HELICASE
PS51192 HELICASE_ATP_BIND_1
PS51194 HELICASE_CTER
PS50967 HRDC

Pfam

Pfam ID Pfam Term
PF08072 BDHCT
PF16204 BDHCT_assoc
PF16202 BLM_N
PF00270 DEAD
PF00271 Helicase_C
PF00570 HRDC
PF16124 RecQ_Zn_bind
PF09382 RQC

Protein-protein interaction

Protein-miRNA interaction