Gene: WNT3

Basic information

Tag Content
Uniprot ID P56703; Q2M237; Q9H1J9;
Entrez ID 7473
Genbank protein ID AAI14220.1; AAI12119.1; AAG38657.1; AAI12117.1; BAB70502.1;
Genbank nucleotide ID NM_030753.4
Ensembl protein ID ENSP00000478327; ENSP00000480990; ENSP00000225512;
Ensembl nucleotide ID ENSG00000108379; ENSG00000277626; ENSG00000277641;
Gene name Proto-oncogene Wnt-3
Gene symbol WNT3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CL/P
Developmental stage
Data sources Manually collected
Reference 22288914; 26505415;
Functional description Ligand for members of the frizzled family of seven transmembrane receptors (Probable). Functions in the canonical Wnt signaling pathway that results in activation of transcription factors of the TCF/LEF family (PubMed:26902720). Required for normal gastrulation, formation of the primitive streak, and for the formation of the mesoderm during early embryogenesis. Required for normal formation of the apical ectodermal ridge (By similarity). Required for normal embryonic development, and especially for limb development (PubMed:14872406).
Sequence
MEPHLLGLLL GLLLGGTRVL AGYPIWWSLA LGQQYTSLGS QPLLCGSIPG LVPKQLRFCR 60
NYIEIMPSVA EGVKLGIQEC QHQFRGRRWN CTTIDDSLAI FGPVLDKATR ESAFVHAIAS 120
AGVAFAVTRS CAEGTSTICG CDSHHKGPPG EGWKWGGCSE DADFGVLVSR EFADARENRP 180
DARSAMNKHN NEAGRTTILD HMHLKCKCHG LSGSCEVKTC WWAQPDFRAI GDFLKDKYDS 240
ASEMVVEKHR ESRGWVETLR AKYSLFKPPT ERDLVYYENS PNFCEPNPET GSFGTRDRTC 300
NVTSHGIDGC DLLCCGRGHN TRTEKRKEKC HCIFHWCCYV SCQECIRIYD VHTCK 355

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


loading...

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologWNT3A0A452F7A0Capra hircusPredictionMore>>
1:1 orthologWNT37473P56703CL/PHomo sapiensPublicationMore>>
1:1 orthologWnt322415P17553Mus musculusPredictionMore>>
1:1 orthologA0A4X1TEB6Sus scrofaPredictionMore>>
1:1 orthologWNT3100009033G1T851Oryctolagus cuniculusPredictionMore>>
1:1 orthologWnt324882D3ZCR1Rattus norvegicusPredictionMore>>
1:1 orthologwnt3569420B0LK22Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
WNT3rs3809857G>TPCR-RFLP26505415
WNT3rs9890413A>GPCR-RFLP26505415
WNT3rs3809857G>TPCR-RFLP22288914
WNT3rs3809857G>T (protective)PCR-RFLP30090211

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005109 frizzled bindingIPI
GO:0005109 frizzled bindingIBA
GO:0005515 protein bindingIPI
GO:0019904 protein domain specific bindingIEA
GO:0048018 receptor ligand activityIDA
GO:0048018 receptor ligand activityIC

GO:Biological Process

GO ID GO Term Evidence
GO:0000902 cell morphogenesisIMP
GO:0001707 mesoderm formationIEA
GO:0007276 gamete generationIEA
GO:0007411 axon guidanceIEA
GO:0009948 anterior/posterior axis specificationIEA
GO:0009950 dorsal/ventral axis specificationIEA
GO:0010628 positive regulation of gene expressionIDA
GO:0016055 Wnt signaling pathwayIBA
GO:0016055 Wnt signaling pathwayTAS
GO:0030177 positive regulation of Wnt signaling pathwayIEA
GO:0030182 neuron differentiationISS
GO:0030182 neuron differentiationIBA
GO:0035115 embryonic forelimb morphogenesisIEA
GO:0035116 embryonic hindlimb morphogenesisIEA
GO:0044338 canonical Wnt signaling pathway involved in mesenchymal stem cell differentiationIMP
GO:0044339 canonical Wnt signaling pathway involved in osteoblast differentiationIMP
GO:0045165 cell fate commitmentIBA
GO:0048697 positive regulation of collateral sprouting in absence of injuryIEA
GO:0048843 negative regulation of axon extension involved in axon guidanceIEA
GO:0050767 regulation of neurogenesisIMP
GO:0060064 Spemann organizer formation at the anterior end of the primitive streakIEA
GO:0060070 canonical Wnt signaling pathwayIDA
GO:0060070 canonical Wnt signaling pathwayTAS
GO:0060174 limb bud formationIMP
GO:0060323 head morphogenesisIEA
GO:0061180 mammary gland epithelium developmentIEP
GO:0071300 cellular response to retinoic acidISS
GO:0072089 stem cell proliferationIMP
GO:1904954 canonical Wnt signaling pathway involved in midbrain dopaminergic neuron differentiationIMP
GO:1905474 canonical Wnt signaling pathway involved in stem cell proliferationIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005615 extracellular spaceTAS
GO:0005615 extracellular spaceIBA
GO:0005788 endoplasmic reticulum lumenTAS
GO:0005796 Golgi lumenTAS
GO:0005886 plasma membraneTAS
GO:0030666 endocytic vesicle membraneTAS
GO:0031012 extracellular matrixIEA
GO:0070062 extracellular exosomeTAS
GO:1990909 Wnt signalosomeIC
GO:1990909 Wnt signalosomeNAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-195721 Signaling by WNTTAS
R-HSA-195721 Signaling by WNTIEA
R-HSA-201681 TCF dependent signaling in response to WNTTAS
R-HSA-3238698 WNT ligand biogenesis and traffickingTAS
R-HSA-3238698 WNT ligand biogenesis and traffickingIEA
R-HSA-372790 Signaling by GPCRIEA
R-HSA-373080 Class B/2 (Secretin family receptors)IEA
R-HSA-500792 GPCR ligand bindingIEA

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0217 Developmental protein
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0449 Lipoprotein
KW-0656 Proto-oncogene
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal
KW-0879 Wnt signaling pathway

Interpro

InterPro ID InterPro Term
IPR005817 Wnt
IPR009141 Wnt3
IPR043158 Wnt_C
IPR018161 Wnt_CS

PROSITE

PROSITE ID PROSITE Term
PS00246 WNT1

Pfam

Pfam ID Pfam Term
PF00110 wnt

Protein-protein interaction

Protein-miRNA interaction