Gene: LOXL3

Basic information

Tag Content
Uniprot ID P58215; D6W5J1; Q2EHP2; Q6IPL7; Q96RS1;
Entrez ID 84695
Genbank protein ID AAK51671.1; EAW99615.1; ABD23013.1; AAK63205.1; EAW99616.1; AAK91134.1; AAH71865.1;
Genbank nucleotide ID NM_032603.4; XM_011533134.2; XM_017005112.1; NM_001289164.2; NM_001289165.1;
Ensembl protein ID ENSP00000377512; ENSP00000264094;
Ensembl nucleotide ID ENSG00000115318
Gene name Lysyl oxidase homolog 3
Gene symbol LOXL3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Protein-lysine 6-oxidase that mediates the oxidation of peptidyl lysine residues to allysine in target proteins (PubMed:17018530, PubMed:28065600). Catalyzes the post-translational oxidative deamination of peptidyl lysine residues in precursors of elastin and different types of collagens, a prerequisite in the formation of cross-links between collagens and elastin (PubMed:17018530). Required for somite boundary formation by catalyzing oxidation of fibronectin (FN1), enhancing integrin signaling in myofibers and their adhesion to the myotendinous junction (MTJ) (By similarity). Acts as a regulator of inflammatory response by inhibiting differentiation of naive CD4(+) T-cells into T-helper Th17 or regulatory T-cells (Treg): acts by interacting with STAT3 in the nucleus and catalyzing both deacetylation and oxidation of lysine residues on STAT3, leading to disrupt STAT3 dimerization and inhibit STAT3 transcription activity (PubMed:28065600). Oxidation of lysine residues to allysine on STAT3 preferentially takes place on lysine residues that are acetylated (PubMed:28065600). Also able to catalyze deacetylation of lysine residues on STAT3 (PubMed:28065600).
Sequence
MRPVSVWQWS PWGLLLCLLC SSCLGSPSPS TGPEKKAGSQ GLRFRLAGFP RKPYEGRVEI 60
QRAGEWGTIC DDDFTLQAAH ILCRELGFTE ATGWTHSAKY GPGTGRIWLD NLSCSGTEQS 120
VTECASRGWG NSDCTHDEDA GVICKDQRLP GFSDSNVIEV EHHLQVEEVR IRPAVGWGRR 180
PLPVTEGLVE VRLPDGWSQV CDKGWSAHNS HVVCGMLGFP SEKRVNAAFY RLLAQRQQHS 240
FGLHGVACVG TEAHLSLCSL EFYRANDTAR CPGGGPAVVS CVPGPVYAAS SGQKKQQQSK 300
PQGEARVRLK GGAHPGEGRV EVLKASTWGT VCDRKWDLHA ASVVCRELGF GSAREALSGA 360
RMGQGMGAIH LSEVRCSGQE LSLWKCPHKN ITAEDCSHSQ DAGVRCNLPY TGAETRIRLS 420
GGRSQHEGRV EVQIGGPGPL RWGLICGDDW GTLEAMVACR QLGLGYANHG LQETWYWDSG 480
NITEVVMSGV RCTGTELSLD QCAHHGTHIT CKRTGTRFTA GVICSETASD LLLHSALVQE 540
TAYIEDRPLH MLYCAAEENC LASSARSANW PYGHRRLLRF SSQIHNLGRA DFRPKAGRHS 600
WVWHECHGHY HSMDIFTHYD ILTPNGTKVA EGHKASFCLE DTECQEDVSK RYECANFGEQ 660
GITVGCWDLY RHDIDCQWID ITDVKPGNYI LQVVINPNFE VAESDFTNNA MKCNCKYDGH 720
RIWVHNCHIG DAFSEEANRR FERYPGQTSN QII 753

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologLOXL3613599E1BFC8Bos taurusPredictionMore>>
1:1 orthologLOXL3483101E2QYZ4Canis lupus familiarisPredictionMore>>
1:1 orthologLOXL3102170055A0A452FS61Capra hircusPredictionMore>>
1:1 orthologLOXL384695P58215Homo sapiensPredictionMore>>
1:1 orthologLoxl316950Q9Z175CPOE12.5, E13.5, E14.5, E15.5, E16.5Mus musculusPublicationMore>>
1:1 orthologLOXL3459340A0A2I3SAT0Pan troglodytesPredictionMore>>
1:1 orthologLOXL3F1SNV7Sus scrofaPredictionMore>>
1:1 orthologLOXL3G1U7Y3Oryctolagus cuniculusPredictionMore>>
1:1 orthologLoxl3312478D3ZP82Rattus norvegicusPredictionMore>>
1:1 orthologloxl3b336266B8A4W9Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0001968 fibronectin bindingISS
GO:0004720 protein-lysine 6-oxidase activityNAS
GO:0004720 protein-lysine 6-oxidase activityIBA
GO:0004720 protein-lysine 6-oxidase activityIDA
GO:0005044 scavenger receptor activityIEA
GO:0005507 copper ion bindingNAS
GO:0005515 protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0001837 epithelial to mesenchymal transitionIDA
GO:0006897 endocytosisIEA
GO:0006954 inflammatory responseISS
GO:0006954 inflammatory responseIBA
GO:0018057 peptidyl-lysine oxidationIBA
GO:0018057 peptidyl-lysine oxidationIDA
GO:0021510 spinal cord developmentISS
GO:0030199 collagen fibril organizationIBA
GO:0030324 lung developmentISS
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0060021 roof of mouth developmentISS
GO:0061053 somite developmentISS
GO:1905590 fibronectin fibril organizationISS
GO:2000329 negative regulation of T-helper 17 cell lineage commitmentISS
GO:2001046 positive regulation of integrin-mediated signaling pathwayISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionIDA
GO:0005615 extracellular spaceISS
GO:0005615 extracellular spaceIBA
GO:0005634 nucleusTAS
GO:0005634 nucleusIDA
GO:0005737 cytoplasmIDA
GO:0016020 membraneIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474290 Collagen formationTAS
R-HSA-1566948 Elastic fibre formationTAS
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structuresTAS
R-HSA-2243919 Crosslinking of collagen fibrilsTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0186 Copper
KW-0963 Cytoplasm
KW-0209 Deafness
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0395 Inflammatory response
KW-0886 LTQ
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0560 Oxidoreductase
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal
KW-0757 Stickler syndrome
KW-0801 TPQ

Interpro

InterPro ID InterPro Term
IPR001695 Lysyl_oxidase
IPR019828 Lysyl_oxidase_CS
IPR001190 SRCR
IPR017448 SRCR-like_dom
IPR036772 SRCR-like_dom_sf

PROSITE

PROSITE ID PROSITE Term
PS00926 LYSYL_OXIDASE
PS00420 SRCR_1
PS50287 SRCR_2

Pfam

Pfam ID Pfam Term
PF01186 Lysyl_oxidase
PF00530 SRCR

Protein-protein interaction

Protein-miRNA interaction