Gene: ESRRG

Basic information

Tag Content
Uniprot ID P62508; A8K4I0; A8K6I2; B3KY84; E9PGB7; F8W8J3; O75454; O96021; Q68DA0; Q6P274; Q6PK28; Q6TS38; Q9R1F3; Q9UNJ4;
Entrez ID 2104
Genbank protein ID BAA74855.2; AAC39899.1; AAC99410.1; BAF83634.1; AAS00098.1; AAQ93381.1; CAH18320.1; AAQ93379.1; BAF83717.1; AAQ93380.1; AAQ93378.1; EAW93335.1; BAG54746.1; BAF84336.1; AAQ93376.1; AAQ93377.1; AAD48370.1; AAH64700.1; AAH08218.1;
Genbank nucleotide ID XM_017000631.1; XM_017000644.1; NM_001243515.1; XM_011509275.1; XM_011509278.1; XM_017000648.1; NM_206594.2; XM_011509277.1; NM_001243514.1; XM_011509274.1; XM_017000643.1; XM_017000638.1; NM_001243510.2; NM_001243507.1; XM_017000642.1; XM_017000633.1; NM_001243519.1; XM_011509276.1; XM_017000636.1; NM_001243505.1; XM_017000640.1; NM_001243506.1; NM_001243511.2; NM_001243513.1; XM_017000646.1; XM_017000645.1; XM_017000649.1; XM_011509267.1; NM_001243509.1; XM_017000634.1; NM_001243512.1; XM_011509280.2; NM_206595.2; XM_011509269.2; NM_001438.3; XM_017000639.1; NM_001243518.1; NM_001134285.2; XM_011509279.1; XM_017000637.1; XM_011509268.2; XM_017000635.1; XM_017000641.1; XM_017000632.1; XM_017000647.1;
Ensembl protein ID ENSP00000418629; ENSP00000419155; ENSP00000355904; ENSP00000500992; ENSP00000352077; ENSP00000355907; ENSP00000355225; ENSP00000375761; ENSP00000353108; ENSP00000354584; ENSP00000355905; ENSP00000419594; ENSP00000481528; ENSP00000386171; ENSP00000417374;
Ensembl nucleotide ID ENSG00000196482
Gene name Estrogen-related receptor gamma
Gene symbol ESRRG
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 29535761
Functional description Orphan receptor that acts as transcription activator in the absence of bound ligand. Binds specifically to an estrogen response element and activates reporter genes controlled by estrogen response elements (By similarity). Induces the expression of PERM1 in the skeletal muscle.
Sequence
MDSVELCLPE SFSLHYEEEL LCRMSNKDRH IDSSCSSFIK TEPSSPASLT DSVNHHSPGG 60
SSDASGSYSS TMNGHQNGLD SPPLYPSAPI LGGSGPVRKL YDDCSSTIVE DPQTKCEYML 120
NSMPKRLCLV CGDIASGYHY GVASCEACKA FFKRTIQGNI EYSCPATNEC EITKRRRKSC 180
QACRFMKCLK VGMLKEGVRL DRVRGGRQKY KRRIDAENSP YLNPQLVQPA KKPYNKIVSH 240
LLVAEPEKIY AMPDPTVPDS DIKALTTLCD LADRELVVII GWAKHIPGFS TLSLADQMSL 300
LQSAWMEILI LGVVYRSLSF EDELVYADDY IMDEDQSKLA GLLDLNNAIL QLVKKYKSMK 360
LEKEEFVTLK AIALANSDSM HIEDVEAVQK LQDVLHEALQ DYEAGQHMED PRRAGKMLMT 420
LPLLRQTSTK AVQHFYNIKL EGKVPMHKLF LEMLEAKV 458

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologESRRG478961J9NWD9Canis lupus familiarisPredictionMore>>
1:1 orthologESRRGA0A452FEX0Capra hircusPredictionMore>>
1:1 orthologESRRG2104P62508Homo sapiensPublicationMore>>
1:1 orthologEsrrg26381P62509Mus musculusPredictionMore>>
1:1 orthologESRRG457738A0A2I3T916Pan troglodytesPredictionMore>>
1:1 orthologESRRG100355568G1SEH2Oryctolagus cuniculusPredictionMore>>
1:1 orthologEsrrg360896P62510Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
ESRRGrs11117745GWAS29535761
ESRRGrs1339221;GWAS29535761

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIEA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIEA
GO:0003707 steroid hormone receptor activityIEA
GO:0004879 nuclear receptor activityIEA
GO:0005496 steroid bindingIEA
GO:0005515 protein bindingIPI
GO:0008270 zinc ion bindingIEA
GO:0050682 AF-2 domain bindingISS

GO:Biological Process

GO ID GO Term Evidence
GO:0006355 regulation of transcription, DNA-templatedIDA
GO:0006367 transcription initiation from RNA polymerase II promoterTAS
GO:0043401 steroid hormone mediated signaling pathwayIEA
GO:0045893 positive regulation of transcription, DNA-templatedISS
GO:0045944 positive regulation of transcription by RNA polymerase IIIEA
GO:0048384 retinoic acid receptor signaling pathwayIEA
GO:0120162 positive regulation of cold-induced thermogenesisISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005654 nucleoplasmTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-383280 Nuclear Receptor transcription pathwayTAS
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-74160 Gene expression (Transcription)TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0010 Activator
KW-0025 Alternative splicing
KW-0238 DNA-binding
KW-1017 Isopeptide bond
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0675 Receptor
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR035500 NHR-like_dom_sf
IPR000536 Nucl_hrmn_rcpt_lig-bd
IPR001723 Nuclear_hrmn_rcpt
IPR027289 Oest-rel_rcp
IPR024178 Oest_rcpt/oest-rel_rcp
IPR003078 Retinoic_acid_rcpt
IPR001628 Znf_hrmn_rcpt
IPR013088 Znf_NHR/GATA

PROSITE

PROSITE ID PROSITE Term
PS51843 NR_LBD
PS00031 NUCLEAR_REC_DBD_1
PS51030 NUCLEAR_REC_DBD_2

Pfam

Pfam ID Pfam Term
PF00104 Hormone_recep
PF00105 zf-C4

Protein-protein interaction

Protein-miRNA interaction