Gene: COL4A3

Basic information

Tag Content
Uniprot ID Q01955; Q53QQ1; Q53R14; Q53RW8; Q9BQT2; Q9NYC4; Q9UDJ9; Q9UDK9; Q9UDL0; Q9UDL1;
Entrez ID 1285
Genbank protein ID CAC36101.1; AAX93111.1; AAY24251.1; AAA51556.1; AAF72632.1; AAY14671.1; AAA21610.1; AAA18943.1; AAB19637.1; BAA25064.1; CAA56335.1; AAA18942.1; AAA52044.1;
Genbank nucleotide ID NM_000091.4
Ensembl protein ID ENSP00000379823
Ensembl nucleotide ID ENSG00000169031
Gene name Collagen alpha-3(IV) chain
Gene symbol COL4A3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 16953426
Functional description Type IV collagen is the major structural component of glomerular basement membranes (GBM), forming a 'chicken-wire' meshwork together with laminins, proteoglycans and entactin/nidogen.
Sequence
MSARTAPRPQ VLLLPLLLVL LAAAPAASKG CVCKDKGQCF CDGAKGEKGE KGFPGPPGSP 60
GQKGFTGPEG LPGPQGPKGF PGLPGLTGSK GVRGISGLPG FSGSPGLPGT PGNTGPYGLV 120
GVPGCSGSKG EQGFPGLPGT LGYPGIPGAA GLKGQKGAPA KEEDIELDAK GDPGLPGAPG 180
PQGLPGPPGF PGPVGPPGPP GFFGFPGAMG PRGPKGHMGE RVIGHKGERG VKGLTGPPGP 240
PGTVIVTLTG PDNRTDLKGE KGDKGAMGEP GPPGPSGLPG ESYGSEKGAP GDPGLQGKPG 300
KDGVPGFPGS EGVKGNRGFP GLMGEDGIKG QKGDIGPPGF RGPTEYYDTY QEKGDEGTPG 360
PPGPRGARGP QGPSGPPGVP GSPGSSRPGL RGAPGWPGLK GSKGERGRPG KDAMGTPGSP 420
GCAGSPGLPG SPGPPGPPGD IVFRKGPPGD HGLPGYLGSP GIPGVDGPKG EPGLLCTQCP 480
YIPGPPGLPG LPGLHGVKGI PGRQGAAGLK GSPGSPGNTG LPGFPGFPGA QGDPGLKGEK 540
GETLQPEGQV GVPGDPGLRG QPGRKGLDGI PGTPGVKGLP GPKGELALSG EKGDQGPPGD 600
PGSPGSPGPA GPAGPPGYGP QGEPGLQGTQ GVPGAPGPPG EAGPRGELSV STPVPGPPGP 660
PGPPGHPGPQ GPPGIPGSLG KCGDPGLPGP DGEPGIPGIG FPGPPGPKGD QGFPGTKGSL 720
GCPGKMGEPG LPGKPGLPGA KGEPAVAMPG GPGTPGFPGE RGNSGEHGEI GLPGLPGLPG 780
TPGNEGLDGP RGDPGQPGPP GEQGPPGRCI EGPRGAQGLP GLNGLKGQQG RRGKTGPKGD 840
PGIPGLDRSG FPGETGSPGI PGHQGEMGPL GQRGYPGNPG ILGPPGEDGV IGMMGFPGAI 900
GPPGPPGNPG TPGQRGSPGI PGVKGQRGTP GAKGEQGDKG NPGPSEISHV IGDKGEPGLK 960
GFAGNPGEKG NRGVPGMPGL KGLKGLPGPA GPPGPRGDLG STGNPGEPGL RGIPGSMGNM 1020
GMPGSKGKRG TLGFPGRAGR PGLPGIHGLQ GDKGEPGYSE GTRPGPPGPT GDPGLPGDMG 1080
KKGEMGQPGP PGHLGPAGPE GAPGSPGSPG LPGKPGPHGD LGFKGIKGLL GPPGIRGPPG 1140
LPGFPGSPGP MGIRGDQGRD GIPGPAGEKG ETGLLRAPPG PRGNPGAQGA KGDRGAPGFP 1200
GLPGRKGAMG DAGPRGPTGI EGFPGPPGLP GAIIPGQTGN RGPPGSRGSP GAPGPPGPPG 1260
SHVIGIKGDK GSMGHPGPKG PPGTAGDMGP PGRLGAPGTP GLPGPRGDPG FQGFPGVKGE 1320
KGNPGFLGSI GPPGPIGPKG PPGVRGDPGT LKIISLPGSP GPPGTPGEPG MQGEPGPPGP 1380
PGNLGPCGPR GKPGKDGKPG TPGPAGEKGN KGSKGEPGPA GSDGLPGLKG KRGDSGSPAT 1440
WTTRGFVFTR HSQTTAIPSC PEGTVPLYSG FSFLFVQGNQ RAHGQDLGTL GSCLQRFTTM 1500
PFLFCNVNDV CNFASRNDYS YWLSTPALMP MNMAPITGRA LEPYISRCTV CEGPAIAIAV 1560
HSQTTDIPPC PHGWISLWKG FSFIMFTSAG SEGTGQALAS PGSCLEEFRA SPFLECHGRG 1620
TCNYYSNSYS FWLASLNPER MFRKPIPSTV KAGELEKIIS RCQVCMKKRH

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


loading...

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCOL4A3F1MZU6Bos taurusPredictionMore>>
1:1 orthologCOL4A31285Q01955CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologCol4a312828Q9QZS0Mus musculusPredictionMore>>
1:1 orthologCOL4A3459988H2QJJ5Pan troglodytesPredictionMore>>
1:1 orthologCOL4A3G1SCM1Oryctolagus cuniculusPredictionMore>>
1:1 orthologCol4a3363265F1LRJ1Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
COL4A3c.4243G>D; p.G1415R and c.4216G>A; p.G1406R (compound heterozygous)WES and Sanger sequencing33524082

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005178 integrin bindingTAS
GO:0005178 integrin bindingIDA
GO:0005198 structural molecule activityNAS
GO:0005201 extracellular matrix structural constituentIBA
GO:0005515 protein bindingIPI
GO:0008191 metalloendopeptidase inhibitor activityNAS
GO:0030020 extracellular matrix structural constituent conferring tensile strengthRCA
GO:0030020 extracellular matrix structural constituent conferring tensile strengthHDA

GO:Biological Process

GO ID GO Term Evidence
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic processIDA
GO:0007155 cell adhesionIEA
GO:0007166 cell surface receptor signaling pathwayNAS
GO:0007605 sensory perception of soundTAS
GO:0008015 blood circulationTAS
GO:0008285 negative regulation of cell population proliferationTAS
GO:0009749 response to glucoseIEA
GO:0010951 negative regulation of endopeptidase activityIEA
GO:0016525 negative regulation of angiogenesisIDA
GO:0030198 extracellular matrix organizationIBA
GO:0030198 extracellular matrix organizationTAS
GO:0032836 glomerular basement membrane developmentISS
GO:0038063 collagen-activated tyrosine kinase receptor signaling pathwayIEA
GO:0072577 endothelial cell apoptotic processIDA
GO:1905563 negative regulation of vascular endothelial cell proliferationIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005587 collagen type IV trimerIDA
GO:0005587 collagen type IV trimerIBA
GO:0005604 basement membraneIDA
GO:0005615 extracellular spaceIBA
GO:0005783 endoplasmic reticulumIDA
GO:0005788 endoplasmic reticulum lumenTAS
GO:0031012 extracellular matrixIBA
GO:0043231 intracellular membrane-bounded organelleIDA
GO:0062023 collagen-containing extracellular matrixHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1266738 Developmental BiologyTAS
R-HSA-1442490 Collagen degradationTAS
R-HSA-1442490 Collagen degradationIEA
R-HSA-1474228 Degradation of the extracellular matrixTAS
R-HSA-1474228 Degradation of the extracellular matrixIEA
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-1474290 Collagen formationTAS
R-HSA-162582 Signal TransductionTAS
R-HSA-1650814 Collagen biosynthesis and modifying enzymesTAS
R-HSA-186797 Signaling by PDGFTAS
R-HSA-2022090 Assembly of collagen fibrils and other multimeric structuresTAS
R-HSA-216083 Integrin cell surface interactionsTAS
R-HSA-216083 Integrin cell surface interactionsIEA
R-HSA-2214320 Anchoring fibril formationTAS
R-HSA-2243919 Crosslinking of collagen fibrilsTAS
R-HSA-3000157 Laminin interactionsIEA
R-HSA-3000157 Laminin interactionsTAS
R-HSA-3000171 Non-integrin membrane-ECM interactionsTAS
R-HSA-3000178 ECM proteoglycansIEA
R-HSA-375165 NCAM signaling for neurite out-growthTAS
R-HSA-419037 NCAM1 interactionsTAS
R-HSA-422475 Axon guidanceTAS
R-HSA-8948216 Collagen chain trimerizationTAS
R-HSA-9006934 Signaling by Receptor Tyrosine KinasesTAS

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0023 Alport syndrome
KW-0025 Alternative splicing
KW-0084 Basement membrane
KW-0130 Cell adhesion
KW-0176 Collagen
KW-0209 Deafness
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-1015 Disulfide bond
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0379 Hydroxylation
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR008160 Collagen
IPR001442 Collagen_IV_NC
IPR036954 Collagen_IV_NC_sf
IPR016187 CTDL_fold

PROSITE

PROSITE ID PROSITE Term
PS51403 NC1_IV

Pfam

Pfam ID Pfam Term
PF01413 C4
PF01391 Collagen

Protein-protein interaction

Protein-miRNA interaction