Gene: PMPCA

Basic information

Tag Content
Uniprot ID Q10713; B4DKL3; E7ET61; Q16639; Q5SXM9; Q8N513;
Entrez ID 23203
Genbank protein ID AAI11400.1; AAI32725.1; EAW88232.1; AAH33103.2; BAA09472.2; AAH22949.1; BAG59225.1; AAI36600.1; BAA04643.1;
Genbank nucleotide ID NM_001282944.1; NM_015160.2; NM_001282946.1;
Ensembl protein ID ENSP00000360782; ENSP00000416702;
Ensembl nucleotide ID ENSG00000165688
Gene name Mitochondrial-processing peptidase subunit alpha
Gene symbol PMPCA
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Substrate recognition and binding subunit of the essential mitochondrial processing protease (MPP), which cleaves the mitochondrial sequence off newly imported precursors proteins.
Sequence
MAAVVLAATR LLRGSGSWGC SRLRFGPPAY RRFSSGGAYP NIPLSSPLPG VPKPVFATVD 60
GQEKFETKVT TLDNGLRVAS QNKFGQFCTV GILINSGSRY EAKYLSGIAH FLEKLAFSST 120
ARFDSKDEIL LTLEKHGGIC DCQTSRDTTM YAVSADSKGL DTVVALLADV VLQPRLTDEE 180
VEMTRMAVQF ELEDLNLRPD PEPLLTEMIH EAAYRENTVG LHRFCPTENV AKINREVLHS 240
YLRNYYTPDR MVLAGVGVEH EHLVDCARKY LLGVQPAWGS AEAVDIDRSV AQYTGGIAKL 300
ERDMSNVSLG PTPIPELTHI MVGLESCSFL EEDFIPFAVL NMMMGGGGSF SAGGPGKGMF 360
SRLYLNVLNR HHWMYNATSY HHSYEDTGLL CIHASADPRQ VREMVEIITK EFILMGGTVD 420
TVELERAKTQ LTSMLMMNLE SRPVIFEDVG RQVLATRSRK LPHELCTLIR NVKPEDVKRV 480
ASKMLRGKPA VAALGDLTDL PTYEHIQTAL SSKDGRLPRT YRLFR 525

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPMPCA767847Q0P5M8Bos taurusPredictionMore>>
1:1 orthologPMPCA480677F1PF09Canis lupus familiarisPredictionMore>>
1:1 orthologPMPCA102171796A0A452EEL9Capra hircusPredictionMore>>
1:1 orthologPMPCA23203Q10713Homo sapiensPredictionMore>>
1:1 orthologPmpca66865Q9DC61CPOMus musculusPublicationMore>>
1:1 orthologPMPCAH2QY64Pan troglodytesPredictionMore>>
1:1 orthologPMPCAA0A5G2Q8L1Sus scrofaPredictionMore>>
1:1 orthologPmpca296588Q68FX8Rattus norvegicusPredictionMore>>
1:1 orthologpmpcaA0A0R4IFK9Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004222 metalloendopeptidase activityTAS
GO:0046872 metal ion bindingIEA
GO:0004175 endopeptidase activityIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0006508 proteolysisTAS
GO:0006627 protein processing involved in protein targeting to mitochondrionIBA
GO:0006627 protein processing involved in protein targeting to mitochondrionIDA
GO:0006627 protein processing involved in protein targeting to mitochondrionIMP
GO:0006851 mitochondrial calcium ion transmembrane transportTAS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005615 extracellular spaceHDA
GO:0005739 mitochondrionIDA
GO:0005739 mitochondrionIBA
GO:0005743 mitochondrial inner membraneTAS
GO:0005743 mitochondrial inner membraneIBA
GO:0005743 mitochondrial inner membraneIDA
GO:0017087 mitochondrial processing peptidase complexIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1268020 Mitochondrial protein importIEA
R-HSA-382551 Transport of small moleculesTAS
R-HSA-8949215 Mitochondrial calcium ion transportTAS
R-HSA-8949664 Processing of SMDT1TAS
R-HSA-9609507 Protein localizationIEA

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0225 Disease mutation
KW-0472 Membrane
KW-0991 Mental retardation
KW-0496 Mitochondrion
KW-0999 Mitochondrion inner membrane
KW-0523 Neurodegeneration
KW-1185 Reference proteome
KW-0809 Transit peptide

Interpro

InterPro ID InterPro Term
IPR011249 Metalloenz_LuxS/M16
IPR011765 Pept_M16_N
IPR001431 Pept_M16_Zn_BS
IPR007863 Peptidase_M16_C
IPR037715 PMPCA

PROSITE

PROSITE ID PROSITE Term
PS00143 INSULINASE

Pfam

Pfam ID Pfam Term
PF00675 Peptidase_M16
PF05193 Peptidase_M16_C

Protein-protein interaction

Protein-miRNA interaction