Gene: TBX2

Basic information

Tag Content
Uniprot ID Q13207; Q16424; Q7Z647;
Entrez ID 6909
Genbank protein ID AAA73861.1; AAH52566.1; AAB36216.1;
Genbank nucleotide ID NM_005994.3
Ensembl protein ID ENSP00000240328
Ensembl nucleotide ID ENSG00000121068
Gene name T-box transcription factor TBX2
Gene symbol TBX2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Involved in the transcriptional regulation of genes required for mesoderm differentiation. Probably plays a role in limb pattern formation. Acts as a negative regulator of PML function in cellular senescence. May be required for cardiac atrioventricular canal formation.
Sequence
MREPALAASA MAYHPFHAPR PADFPMSAFL AAAQPSFFPA LALPPGALAK PLPDPGLAGA 60
AAAAAAAAAA AEAGLHVSAL GPHPPAAHLR SLKSLEPEDE VEDDPKVTLE AKELWDQFHK 120
LGTEMVITKS GRRMFPPFKV RVSGLDKKAK YILLMDIVAA DDCRYKFHNS RWMVAGKADP 180
EMPKRMYIHP DSPATGEQWM AKPVAFHKLK LTNNISDKHG FTILNSMHKY QPRFHIVRAN 240
DILKLPYSTF RTYVFPETDF IAVTAYQNDK ITQLKIDNNP FAKGFRDTGN GRREKRKQLT 300
LPSLRLYEEH CKPERDGAES DASSCDPPPA REPPTSPGAA PSPLRLHRAR AEEKSCAADS 360
DPEPERLSEE RAGAPLGRSP APDSASPTRL TEPERARERR SPERGKEPAE SGGDGPFGLR 420
SLEKERAEAR RKDEGRKEAA EGKEQGLAPL VVQTDSASPL GAGHLPGLAF SSHLHGQQFF 480
GPLGAGQPLF LHPGQFTMGP GAFSAMGMGH LLASVAGGGN GGGGGPGTAA GLDAGGLGPA 540
ASAASTAAPF PFHLSQHMLA SQGIPMPTFG GLFPYPYTYM AAAAAAASAL PATSAAAAAA 600
AAAGSLSRSP FLGSARPRLR FSPYQIPVTI PPSTSLLTTG LASEGSKAAG GNSREPSPLP 660
ELALRKVGAP SRGALSPSGS AKEAANELQS IQRLVSGLES QRALSPGRES PK 712

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologTBX2535982E1BLY0Bos taurusPredictionMore>>
1:1 orthologTBX2J9NV98Canis lupus familiarisPredictionMore>>
1:1 orthologTBX2A0A452EL03Capra hircusPredictionMore>>
1:1 orthologTBX26909Q13207Homo sapiensPredictionMore>>
1:1 orthologTbx221385Q60707CPOMus musculusPublicationMore>>
1:1 orthologTBX2454800H2QDL3Pan troglodytesPredictionMore>>
1:1 orthologTBX2100622658F8SIP4Sus scrofaPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIBA
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA bindingIDA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001102 RNA polymerase II activating transcription factor bindingIBA
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specificIDA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIBA
GO:0003677 DNA bindingTAS
GO:0005515 protein bindingIPI
GO:0043565 sequence-specific DNA bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0000122 negative regulation of transcription by RNA polymerase IIIBA
GO:0001708 cell fate specificationIBA
GO:0001947 heart loopingISS
GO:0001947 heart loopingIBA
GO:0003148 outflow tract septum morphogenesisISS
GO:0003151 outflow tract morphogenesisISS
GO:0003203 endocardial cushion morphogenesisISS
GO:0003205 cardiac chamber developmentIBA
GO:0003256 regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiationISS
GO:0007219 Notch signaling pathwayIEA
GO:0007417 central nervous system developmentIBA
GO:0007521 muscle cell fate determinationISS
GO:0007569 cell agingIDA
GO:0008016 regulation of heart contractionISS
GO:0008284 positive regulation of cell population proliferationIDA
GO:0008284 positive regulation of cell population proliferationIBA
GO:0035050 embryonic heart tube developmentISS
GO:0035909 aorta morphogenesisISS
GO:0036302 atrioventricular canal developmentISS
GO:0042733 embryonic digit morphogenesisISS
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIBA
GO:0048596 embryonic camera-type eye morphogenesisISS
GO:0048738 cardiac muscle tissue developmentISS
GO:0060021 roof of mouth developmentIEA
GO:0060045 positive regulation of cardiac muscle cell proliferationISS
GO:0060465 pharynx developmentISS
GO:0060560 developmental growth involved in morphogenesisIEA
GO:0060596 mammary placode formationIEA
GO:0090398 cellular senescenceIDA
GO:1901208 negative regulation of heart loopingISS
GO:1901211 negative regulation of cardiac chamber formationISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA
GO:0005667 transcription factor complexIEA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR022582 TBX
IPR002070 TF_Brachyury
IPR001699 TF_T-box
IPR018186 TF_T-box_CS

PROSITE

PROSITE ID PROSITE Term
PS01283 TBOX_1
PS01264 TBOX_2
PS50252 TBOX_3

Pfam

Pfam ID Pfam Term
PF00907 T-box
PF12598 TBX

Protein-protein interaction

Protein-miRNA interaction