Gene: PTPRS

Basic information

Tag Content
Uniprot ID Q13332; O75255; O75870; Q15718; Q16341; Q2M3R7;
Entrez ID 5802
Genbank protein ID AAC62834.1; AAC62832.1; AAI43288.1; EAW69176.1; AAC50567.1; AAI04813.1; AAB21146.2; AAC50299.1; AAC27825.1;
Genbank nucleotide ID XM_017027065.1; XM_017027067.1; XM_005259609.1; NM_130853.2; NM_130855.2; XM_005259606.2; NM_002850.3; XM_017027066.1; NM_130854.2;
Ensembl protein ID ENSP00000467398; ENSP00000467537; ENSP00000465443;
Ensembl nucleotide ID ENSG00000105426
Gene name Receptor-type tyrosine-protein phosphatase S
Gene symbol PTPRS
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Cell surface receptor that binds to glycosaminoglycans, including chondroitin sulfate proteoglycans and heparan sulfate proteoglycan (PubMed:21454754). Binding to chondroitin sulfate and heparan sulfate proteoglycans has opposite effects on PTPRS oligomerization and regulation of neurite outgrowth. Contributes to the inhibition of neurite and axonal outgrowth by chondroitin sulfate proteoglycans, also after nerve transection. Plays a role in stimulating neurite outgrowth in response to the heparan sulfate proteoglycan GPC2. Required for normal brain development, especially for normal development of the pituitary gland and the olfactory bulb. Functions as tyrosine phosphatase (PubMed:8524829). Mediates dephosphorylation of NTRK1, NTRK2 and NTRK3 (By similarity). Plays a role in down-regulation of signaling cascades that lead to the activation of Akt and MAP kinases (By similarity). Down-regulates TLR9-mediated activation of NF-kappa-B, as well as production of TNF, interferon alpha and interferon beta (PubMed:26231120).
Sequence
MAPTWGPGMV SVVGPMGLLV VLLVGGCAAE EPPRFIKEPK DQIGVSGGVA SFVCQATGDP 60
KPRVTWNKKG KKVNSQRFET IEFDESAGAV LRIQPLRTPR DENVYECVAQ NSVGEITVHA 120
KLTVLREDQL PSGFPNIDMG PQLKVVERTR TATMLCAASG NPDPEITWFK DFLPVDPSAS 180
NGRIKQLRSE TFESTPIRGA LQIESSEETD QGKYECVATN SAGVRYSSPA NLYVRELREV 240
RRVAPRFSIL PMSHEIMPGG NVNITCVAVG SPMPYVKWMQ GAEDLTPEDD MPVGRNVLEL 300
TDVKDSANYT CVAMSSLGVI EAVAQITVKS LPKAPGTPMV TENTATSITI TWDSGNPDPV 360
SYYVIEYKSK SQDGPYQIKE DITTTRYSIG GLSPNSEYEI WVSAVNSIGQ GPPSESVVTR 420
TGEQAPASAP RNVQARMLSA TTMIVQWEEP VEPNGLIRGY RVYYTMEPEH PVGNWQKHNV 480
DDSLLTTVGS LLEDETYTVR VLAFTSVGDG PLSDPIQVKT QQGVPGQPMN LRAEARSETS 540
ITLSWSPPRQ ESIIKYELLF REGDHGREVG RTFDPTTSYV VEDLKPNTEY AFRLAARSPQ 600
GLGAFTPVVR QRTLQSKPSA PPQDVKCVSV RSTAILVSWR PPPPETHNGA LVGYSVRYRP 660
LGSEDPEPKE VNGIPPTTTQ ILLEALEKWT QYRITTVAHT EVGPGPESSP VVVRTDEDVP 720
SAPPRKVEAE ALNATAIRVL WRSPAPGRQH GQIRGYQVHY VRMEGAEARG PPRIKDVMLA 780
DAQWETDDTA EYEMVITNLQ PETAYSITVA AYTMKGDGAR SKPKVVVTKG AVLGRPTLSV 840
QQTPEGSLLA RWEPPAGTAE DQVLGYRLQF GREDSTPLAT LEFPPSEDRY TASGVHKGAT 900
YVFRLAARSR GGLGEEAAEV LSIPEDTPRG HPQILEAAGN ASAGTVLLRW LPPVPAERNG 960
AIVKYTVAVR EAGALGPARE TELPAAAEPG AENALTLQGL KPDTAYDLQV RAHTRRGPGP 1020
FSPPVRYRTF LRDQVSPKNF KVKMIMKTSV LLSWEFPDNY NSPTPYKIQY NGLTLDVDGR 1080
TTKKLITHLK PHTFYNFVLT NRGSSLGGLQ QTVTAWTAFN LLNGKPSVAP KPDADGFIMV 1140
YLPDGQSPVP VQSYFIVMVP LRKSRGGQFL TPLGSPEDMD LEELIQDISR LQRRSLRHSR 1200
QLEVPRPYIA ARFSVLPPTF HPGDQKQYGG FDNRGLEPGH RYVLFVLAVL QKSEPTFAAS 1260
PFSDPFQLDN PDPQPIVDGE EGLIWVIGPV LAVVFIICIV IAILLYKNKP DSKRKDSEPR 1320
TKCLLNNADL APHHPKDPVE MRRINFQTPD SGLRSPLREP GFHFESMLSH PPIPIADMAE 1380
HTERLKANDS LKLSQEYESI DPGQQFTWEH SNLEVNKPKN RYANVIAYDH SRVILQPIEG 1440
IMGSDYINAN YVDGYRCQNA YIATQGPLPE TFGDFWRMVW EQRSATIVMM TRLEEKSRIK 1500
CDQYWPNRGT ETYGFIQVTL LDTIELATFC VRTFSLHKNG SSEKREVRQF QFTAWPDHGV 1560
PEYPTPFLAF LRRVKTCNPP DAGPIVVHCS AGVGRTGCFI VIDAMLERIK PEKTVDVYGH 1620
VTLMRSQRNY MVQTEDQYSF IHEALLEAVG CGNTEVPARS LYAYIQKLAQ VEPGEHVTGM 1680
ELEFKRLANS KAHTSRFISA NLPCNKFKNR LVNIMPYEST RVCLQPIRGV EGSDYINASF 1740
IDGYRQQKAY IATQGPLAET TEDFWRMLWE NNSTIVVMLT KLREMGREKC HQYWPAERSA 1800
RYQYFVVDPM AEYNMPQYIL REFKVTDARD GQSRTVRQFQ FTDWPEQGVP KSGEGFIDFI 1860
GQVHKTKEQF GQDGPISVHC SAGVGRTGVF ITLSIVLERM RYEGVVDIFQ TVKMLRTQRP 1920
AMVQTEDEYQ FCYQAALEYL GSFDHYAT 1948

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPTPRSA0A452GAY8Capra hircusPredictionMore>>
1:1 orthologPTPRS5802Q13332Homo sapiensPredictionMore>>
1:1 orthologPtprs19280B0V2N1CPOMus musculusPublicationMore>>
1:1 orthologPtprsM0R711Rattus norvegicusPredictionMore>>
1:1 orthologptprsaF1QLA4Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004721 phosphoprotein phosphatase activityIDA
GO:0004725 protein tyrosine phosphatase activityISS
GO:0004725 protein tyrosine phosphatase activityIBA
GO:0005515 protein bindingIPI
GO:0008201 heparin bindingISS
GO:0035374 chondroitin sulfate bindingISS
GO:0043395 heparan sulfate proteoglycan bindingISS

GO:Biological Process

GO ID GO Term Evidence
GO:0006470 protein dephosphorylationIBA
GO:0006470 protein dephosphorylationIDA
GO:0010977 negative regulation of neuron projection developmentISS
GO:0021510 spinal cord developmentIEA
GO:0021549 cerebellum developmentIEA
GO:0021766 hippocampus developmentIEA
GO:0021987 cerebral cortex developmentIEA
GO:0022038 corpus callosum developmentIEA
GO:0030517 negative regulation of axon extensionISS
GO:0032687 negative regulation of interferon-alpha productionIMP
GO:0032688 negative regulation of interferon-beta productionIMP
GO:0034164 negative regulation of toll-like receptor 9 signaling pathwayIMP
GO:0035335 peptidyl-tyrosine dephosphorylationISS
GO:0048671 negative regulation of collateral sproutingISS
GO:0048681 negative regulation of axon regenerationISS
GO:0050804 modulation of chemical synaptic transmissionIEA
GO:0061000 negative regulation of dendritic spine developmentISS
GO:0090557 establishment of endothelial intestinal barrierIEA
GO:0099151 regulation of postsynaptic density assemblyIEA
GO:0099560 synaptic membrane adhesionIBA
GO:0099560 synaptic membrane adhesionIDA
GO:0099560 synaptic membrane adhesionIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005829 cytosolIDA
GO:0005886 plasma membraneIDA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneTAS
GO:0030054 cell junctionIEA
GO:0030285 integral component of synaptic vesicle membraneISS
GO:0030424 axonISS
GO:0030426 growth coneIEA
GO:0043204 perikaryonIEA
GO:0070062 extracellular exosomeHDA
GO:0098685 Schaffer collateral - CA1 synapseIEA
GO:0098978 glutamatergic synapseIEA
GO:0099056 integral component of presynaptic membraneIEA
GO:0099061 integral component of postsynaptic density membraneISS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-112316 Neuronal SystemTAS
R-HSA-1474244 Extracellular matrix organizationIEA
R-HSA-162582 Signal TransductionIEA
R-HSA-166520 Signaling by NTRKsIEA
R-HSA-3000178 ECM proteoglycansIEA
R-HSA-388844 Receptor-type tyrosine-protein phosphatasesTAS
R-HSA-6794362 Protein-protein interactions at synapsesTAS
R-HSA-8849932 Synaptic adhesion-like moleculesTAS
R-HSA-9006934 Signaling by Receptor Tyrosine KinasesIEA
R-HSA-9034015 Signaling by NTRK3 (TRKC)IEA

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0130 Cell adhesion
KW-0965 Cell junction
KW-1003 Cell membrane
KW-0966 Cell projection
KW-0968 Cytoplasmic vesicle
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0358 Heparin-binding
KW-0378 Hydrolase
KW-0393 Immunoglobulin domain
KW-0472 Membrane
KW-0621 Polymorphism
KW-0904 Protein phosphatase
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0770 Synapse
KW-0771 Synaptosome
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR013098 Ig_I-set
IPR003599 Ig_sub
IPR003598 Ig_sub2
IPR029021 Prot-tyrosine_phosphatase-like
IPR000242 PTPase_domain
IPR016130 Tyr_Pase_AS
IPR003595 Tyr_Pase_cat
IPR000387 TYR_PHOSPHATASE_dom

PROSITE

PROSITE ID PROSITE Term
PS50853 FN3
PS50835 IG_LIKE
PS00383 TYR_PHOSPHATASE_1
PS50056 TYR_PHOSPHATASE_2
PS50055 TYR_PHOSPHATASE_PTP

Pfam

Pfam ID Pfam Term
PF00041 fn3
PF07679 I-set
PF00102 Y_phosphatase

Protein-protein interaction

Protein-miRNA interaction