Gene: PTCH1

Basic information

Tag Content
Uniprot ID Q13635; A3KBI9; E9PEJ8; Q13463; Q5R1U7; Q5R1U9; Q5R1V0; Q5VZC0; Q5VZC2; Q86XG7;
Entrez ID 5727
Genbank protein ID BAD74185.1; BAD74186.1; BAD74188.1; BAD74184.1; AAH43542.1; BAF47712.1; AAC50496.1; BAD74187.1; AAC50550.1;
Genbank nucleotide ID NM_001083605.1; NM_001083607.1; NM_001083602.1; NM_000264.3; NM_001083603.1; NM_001083604.1; NM_001083606.1;
Ensembl protein ID ENSP00000332353; ENSP00000364423; ENSP00000389744; ENSP00000399981; ENSP00000414823; ENSP00000410287; ENSP00000396135;
Ensembl nucleotide ID ENSG00000185920
Gene name Protein patched homolog 1
Gene symbol PTCH1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 28232668
Functional description Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.
Sequence
MASAGNAAEP QDRGGGGSGC IGAPGRPAGG GRRRRTGGLR RAAAPDRDYL HRPSYCDAAF 60
ALEQISKGKA TGRKAPLWLR AKFQRLLFKL GCYIQKNCGK FLVVGLLIFG AFAVGLKAAN 120
LETNVEELWV EVGGRVSREL NYTRQKIGEE AMFNPQLMIQ TPKEEGANVL TTEALLQHLD 180
SALQASRVHV YMYNRQWKLE HLCYKSGELI TETGYMDQII EYLYPCLIIT PLDCFWEGAK 240
LQSGTAYLLG KPPLRWTNFD PLEFLEELKK INYQVDSWEE MLNKAEVGHG YMDRPCLNPA 300
DPDCPATAPN KNSTKPLDMA LVLNGGCHGL SRKYMHWQEE LIVGGTVKNS TGKLVSAHAL 360
QTMFQLMTPK QMYEHFKGYE YVSHINWNED KAAAILEAWQ RTYVEVVHQS VAQNSTQKVL 420
SFTTTTLDDI LKSFSDVSVI RVASGYLLML AYACLTMLRW DCSKSQGAVG LAGVLLVALS 480
VAAGLGLCSL IGISFNAATT QVLPFLALGV GVDDVFLLAH AFSETGQNKR IPFEDRTGEC 540
LKRTGASVAL TSISNVTAFF MAALIPIPAL RAFSLQAAVV VVFNFAMVLL IFPAILSMDL 600
YRREDRRLDI FCCFTSPCVS RVIQVEPQAY TDTHDNTRYS PPPPYSSHSF AHETQITMQS 660
TVQLRTEYDP HTHVYYTTAE PRSEISVQPV TVTQDTLSCQ SPESTSSTRD LLSQFSDSSL 720
HCLEPPCTKW TLSSFAEKHY APFLLKPKAK VVVIFLFLGL LGVSLYGTTR VRDGLDLTDI 780
VPRETREYDF IAAQFKYFSF YNMYIVTQKA DYPNIQHLLY DLHRSFSNVK YVMLEENKQL 840
PKMWLHYFRD WLQGLQDAFD SDWETGKIMP NNYKNGSDDG VLAYKLLVQT GSRDKPIDIS 900
QLTKQRLVDA DGIINPSAFY IYLTAWVSND PVAYAASQAN IRPHRPEWVH DKADYMPETR 960
LRIPAAEPIE YAQFPFYLNG LRDTSDFVEA IEKVRTICSN YTSLGLSSYP NGYPFLFWEQ 1020
YIGLRHWLLL FISVVLACTF LVCAVFLLNP WTAGIIVMVL ALMTVELFGM MGLIGIKLSA 1080
VPVVILIASV GIGVEFTVHV ALAFLTAIGD KNRRAVLALE HMFAPVLDGA VSTLLGVLML 1140
AGSEFDFIVR YFFAVLAILT ILGVLNGLVL LPVLLSFFGP YPEVSPANGL NRLPTPSPEP 1200
PPSVVRFAMP PGHTHSGSDS SDSEYSSQTT VSGLSEELRH YEAQQGAGGP AHQVIVEATE 1260
NPVFAHSTVV HPESRHHPPS NPRQQPHLDS GSLPPGRQGQ QPRRDPPREG LWPPPYRPRR 1320
DAFEISTEGH SGPSNRARWG PRGARSHNPR NPASTAMGSS VPGYCQPITT VTASASVTVA 1380
VHPPPVPGPG RNPRGGLCPG YPETDHGLFE DPHVPFHVRC ERRDSKVEVI ELQDVECEER 1440
PRGSSSN 1447

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPTCH1A0A452EIX7Capra hircusPredictionMore>>
1:1 orthologPTCH15727Q13635Homo sapiensPublicationMore>>
1:1 orthologPtch119206Q61115CPO,CLP,CLOE13.0, E13.5, E14.5Mus musculusPublicationMore>>
1:1 orthologPTCH1465254A0A2J8JHA7Pan troglodytesPredictionMore>>
1:1 orthologPtch189830Q6UY90Rattus norvegicusPredictionMore>>
1:1 orthologptch1F8W5M6Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
PTCH1rs10512248HI-SNP 30172247
PTCH1c.1175C>T; p.Ala392Val (heterozygous)WES and Sanger sequencing29908092
PTCH1rs10512248A>CGWAS28232668
PTCH1c.1111C>T; p.A371* (heterozygous)Sequencing30962945

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005113 patched bindingIEA
GO:0005119 smoothened bindingIPI
GO:0005119 smoothened bindingIBA
GO:0005515 protein bindingIPI
GO:0008158 hedgehog receptor activityIBA
GO:0008201 heparin bindingIEA
GO:0015485 cholesterol bindingIDA
GO:0030332 cyclin bindingIPI
GO:0044877 protein-containing complex bindingIEA
GO:0097108 hedgehog family protein bindingIBA
GO:0097108 hedgehog family protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIMP
GO:0001658 branching involved in ureteric bud morphogenesisIEA
GO:0001701 in utero embryonic developmentIEA
GO:0001709 cell fate determinationIEA
GO:0001843 neural tube closureIEA
GO:0003007 heart morphogenesisIEA
GO:0007224 smoothened signaling pathwayISS
GO:0007224 smoothened signaling pathwayIEP
GO:0007224 smoothened signaling pathwayIBA
GO:0007346 regulation of mitotic cell cycleIEA
GO:0007420 brain developmentISS
GO:0008589 regulation of smoothened signaling pathwayISS
GO:0009612 response to mechanical stimulusIEA
GO:0009887 animal organ morphogenesisISS
GO:0009953 dorsal/ventral pattern formationISS
GO:0009957 epidermal cell fate specificationIEA
GO:0010157 response to chlorateIEA
GO:0010875 positive regulation of cholesterol effluxIDA
GO:0016485 protein processingISS
GO:0021522 spinal cord motor neuron differentiationIEA
GO:0021532 neural tube patterningIMP
GO:0021997 neural plate axis specificationISS
GO:0030326 embryonic limb morphogenesisISS
GO:0030850 prostate gland developmentIEA
GO:0032355 response to estradiolIEA
GO:0032526 response to retinoic acidIEA
GO:0032880 regulation of protein localizationIEA
GO:0035108 limb morphogenesisIMP
GO:0035137 hindlimb morphogenesisIEA
GO:0040015 negative regulation of multicellular organism growthISS
GO:0042493 response to drugIEA
GO:0042593 glucose homeostasisIEA
GO:0043433 negative regulation of DNA-binding transcription factor activityIMP
GO:0043616 keratinocyte proliferationIEA
GO:0045606 positive regulation of epidermal cell differentiationIEA
GO:0045668 negative regulation of osteoblast differentiationIMP
GO:0045879 negative regulation of smoothened signaling pathwayISS
GO:0045879 negative regulation of smoothened signaling pathwayTAS
GO:0045893 positive regulation of transcription, DNA-templatedIEA
GO:0048568 embryonic organ developmentIEA
GO:0048745 smooth muscle tissue developmentIEP
GO:0050680 negative regulation of epithelial cell proliferationIEA
GO:0051782 negative regulation of cell divisionIEA
GO:0060037 pharyngeal system developmentIMP
GO:0060603 mammary gland duct morphogenesisIEA
GO:0060644 mammary gland epithelial cell differentiationIEA
GO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterningIEA
GO:0061005 cell differentiation involved in kidney developmentIEA
GO:0061053 somite developmentIMP
GO:0071397 cellular response to cholesterolISS
GO:0071397 cellular response to cholesterolIMP
GO:0071679 commissural neuron axon guidanceIEA
GO:0072203 cell proliferation involved in metanephros developmentIEA
GO:0072205 metanephric collecting duct developmentIEP
GO:0072659 protein localization to plasma membraneIDA
GO:0097421 liver regenerationIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIEA
GO:0005886 plasma membraneIDA
GO:0005886 plasma membraneIBA
GO:0005901 caveolaIDA
GO:0014069 postsynaptic densityIEA
GO:0016021 integral component of membraneIEA
GO:0030496 midbodyIEA
GO:0030666 endocytic vesicle membraneTAS
GO:0043231 intracellular membrane-bounded organelleIDA
GO:0044294 dendritic growth coneIEA
GO:0044295 axonal growth coneIEA
GO:0048471 perinuclear region of cytoplasmIDA
GO:0060170 ciliary membraneTAS
GO:0005794 Golgi apparatusIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-372790 Signaling by GPCRIEA
R-HSA-373080 Class B/2 (Secretin family receptors)IEA
R-HSA-500792 GPCR ligand bindingIEA
R-HSA-5358351 Signaling by HedgehogTAS
R-HSA-5358351 Signaling by HedgehogIEA
R-HSA-5610787 Hedgehog 'off' stateTAS
R-HSA-5632681 Ligand-receptor interactionsTAS
R-HSA-5632681 Ligand-receptor interactionsIEA
R-HSA-5632684 Hedgehog 'on' stateTAS
R-HSA-5632684 Hedgehog 'on' stateIEA
R-HSA-5635838 Activation of SMOTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-1003 Cell membrane
KW-0225 Disease mutation
KW-0325 Glycoprotein
KW-0370 Holoprosencephaly
KW-1017 Isopeptide bond
KW-0472 Membrane
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0675 Receptor
KW-1185 Reference proteome
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0043 Tumor suppressor
KW-0832 Ubl conjugation

Interpro

InterPro ID InterPro Term
IPR003392 Ptc/Disp
IPR000731 SSD
IPR004766 TM_rcpt_patched

PROSITE

PROSITE ID PROSITE Term
PS50156 SSD

Pfam

Pfam ID Pfam Term
PF02460 Patched

Protein-protein interaction

Protein-miRNA interaction