Gene: ARID5B

Basic information

Tag Content
Uniprot ID Q14865; B4DLB3; Q05DG6; Q32Q59; Q5VST4; Q6NZ42; Q7Z3M4; Q8N421; Q9H786;
Entrez ID 84159
Genbank protein ID AAH66345.1; AAH15120.1; AAH36831.1; AAI07801.1; CAE46013.1; BAG59475.1; CAD97814.1; BAB15012.1; AAA59870.1;
Genbank nucleotide ID NM_032199.2; NM_001244638.1;
Ensembl protein ID ENSP00000279873; ENSP00000308862;
Ensembl nucleotide ID ENSG00000150347
Gene name AT-rich interactive domain-containing protein 5B
Gene symbol ARID5B
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Transcription coactivator that binds to the 5'-AATA[CT]-3' core sequence and plays a key role in adipogenesis and liver development. Acts by forming a complex with phosphorylated PHF2, which mediates demethylation at Lys-336, leading to target the PHF2-ARID5B complex to target promoters, where PHF2 mediates demethylation of dimethylated 'Lys-9' of histone H3 (H3K9me2), followed by transcription activation of target genes. The PHF2-ARID5B complex acts as a coactivator of HNF4A in liver. Required for adipogenesis: regulates triglyceride metabolism in adipocytes by regulating expression of adipogenic genes. Overexpression leads to induction of smooth muscle marker genes, suggesting that it may also act as a regulator of smooth muscle cell differentiation and proliferation. Represses the cytomegalovirus enhancer.
Sequence
MEPNSLQWVG SPCGLHGPYI FYKAFQFHLE GKPRILSLGD FFFVRCTPKD PICIAELQLL 60
WEERTSRQLL SSSKLYFLPE DTPQGRNSDH GEDEVIAVSE KVIVKLEDLV KWVHSDFSKW 120
RCGFHAGPVK TEALGRNGQK EALLKYRQST LNSGLNFKDV LKEKADLGED EEETNVIVLS 180
YPQYCRYRSM LKRIQDKPSS ILTDQFALAL GGIAVVSRNP QILYCRDTFD HPTLIENESI 240
CDEFAPNLKG RPRKKKPCPQ RRDSFSGVKD SNNNSDGKAV AKVKCEARSA LTKPKNNHNC 300
KKVSNEEKPK VAIGEECRAD EQAFLVALYK YMKERKTPIE RIPYLGFKQI NLWTMFQAAQ 360
KLGGYETITA RRQWKHIYDE LGGNPGSTSA ATCTRRHYER LILPYERFIK GEEDKPLPPI 420
KPRKQENSSQ ENENKTKVSG TKRIKHEIPK SKKEKENAPK PQDAAEVSSE QEKEQETLIS 480
QKSIPEPLPA ADMKKKIEGY QEFSAKPLAS RVDPEKDNET DQGSNSEKVA EEAGEKGPTP 540
PLPSAPLAPE KDSALVPGAS KQPLTSPSAL VDSKQESKLC CFTESPESEP QEASFPSFPT 600
TQPPLANQNE TEDDKLPAMA DYIANCTVKV DQLGSDDIHN ALKQTPKVLV VQSFDMFKDK 660
DLTGPMNENH GLNYTPLLYS RGNPGIMSPL AKKKLLSQVS GASLSSSYPY GSPPPLISKK 720
KLIARDDLCS SLSQTHHGQS TDHMAVSRPS VIQHVQSFRS KPSEERKTIN DIFKHEKLSR 780
SDPHRCSFSK HHLNPLADSY VLKQEIQEGK DKLLEKRALP HSHMPSFLAD FYSSPHLHSL 840
YRHTEHHLHN EQTSKYPSRD MYRESENSSF PSHRHQEKLH VNYLTSLHLQ DKKSAAAEAP 900
TDDQPTDLSL PKNPHKPTGK VLGLAHSTTG PQESKGISQF QVLGSQSRDC HPKACRVSPM 960
TMSGPKKYPE SLSRSGKPHH VRLENFRKME GMVHPILHRK MSPQNIGAAR PIKRSLEDLD 1020
LVIAGKKARA VSPLDPSKEV SGKEKASEQE SEGSKAAHGG HSGGGSEGHK LPLSSPIFPG 1080
LYSGSLCNSG LNSRLPAGYS HSLQYLKNQT VLSPLMQPLA FHSLVMQRGI FTSPTNSQQL 1140
YRHLAAATPV GSSYGDLLHN SIYPLAAINP QAAFPSSQLS SVHPSTKL 1188

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologARID5B479217J9NV13Canis lupus familiarisPredictionMore>>
1:1 orthologARID5B102169735A0A452F8Y8Capra hircusPredictionMore>>
1:1 orthologARID5B84159Q14865Homo sapiensPredictionMore>>
1:1 orthologArid5b71371Q8BM75CPOMus musculusPublicationMore>>
1:1 orthologARID5B745725K7DSK8Pan troglodytesPredictionMore>>
1:1 orthologARID5B100352095G1U8W9Oryctolagus cuniculusPredictionMore>>
1:1 orthologarid5bE7F888Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIDA
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specificIDA
GO:0003677 DNA bindingIDA
GO:0003713 transcription coactivator activityIDA
GO:0005515 protein bindingIPI
GO:0044212 transcription regulatory region DNA bindingIDA
GO:0044212 transcription regulatory region DNA bindingIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0001822 kidney developmentIEA
GO:0001889 liver developmentTAS
GO:0006357 regulation of transcription by RNA polymerase IIIBA
GO:0006807 nitrogen compound metabolic processIEA
GO:0008584 male gonad developmentIEA
GO:0008585 female gonad developmentIEA
GO:0009791 post-embryonic developmentIEA
GO:0010761 fibroblast migrationIEA
GO:0030325 adrenal gland developmentIEA
GO:0035264 multicellular organism growthIEA
GO:0045444 fat cell differentiationIEA
GO:0045892 negative regulation of transcription, DNA-templatedTAS
GO:0048008 platelet-derived growth factor receptor signaling pathwayIEA
GO:0048468 cell developmentIEA
GO:0048644 muscle organ morphogenesisIEA
GO:0048705 skeletal system morphogenesisIEA
GO:0051091 positive regulation of DNA-binding transcription factor activityIDA
GO:0060021 roof of mouth developmentIEA
GO:0060325 face morphogenesisIEA
GO:0060612 adipose tissue developmentISS
GO:0060613 fat pad developmentIEA
GO:1903508 positive regulation of nucleic acid-templated transcriptionIEA
GO:1990830 cellular response to leukemia inhibitory factorIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-3214842 HDMs demethylate histonesTAS
R-HSA-3247509 Chromatin modifying enzymesTAS
R-HSA-4839726 Chromatin organizationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0010 Activator
KW-0025 Alternative splicing
KW-0238 DNA-binding
KW-1017 Isopeptide bond
KW-0488 Methylation
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation

Interpro

InterPro ID InterPro Term
IPR030408 ARID5B
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR043151 BAH_sf

PROSITE

PROSITE ID PROSITE Term
PS51011 ARID

Pfam

Pfam ID Pfam Term
PF01388 ARID

Protein-protein interaction

Protein-miRNA interaction