Gene: PKDCC

Basic information

Tag Content
Uniprot ID Q504Y2; D6W5A0; Q96I09;
Entrez ID 91461
Genbank protein ID AAI10515.1; AAH07901.2; EAX00325.1; AAH62988.1; AAI10514.1; EAX00326.1; AAH94697.1;
Genbank nucleotide ID NM_138370.2
Ensembl protein ID ENSP00000294964
Ensembl nucleotide ID ENSG00000162878
Gene name Extracellular tyrosine-protein kinase PKDCC
Gene symbol PKDCC
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Secreted tyrosine-protein kinase that mediates phosphorylation of extracellular proteins and endogenous proteins in the secretory pathway, which is essential for patterning at organogenesis stages. Mediates phosphorylation of MMP1, MMP13, MMP14, MMP19 and ERP29 (PubMed:25171405). Probably plays a role in platelets: rapidly and quantitatively secreted from platelets in response to stimulation of platelet degranulation (PubMed:25171405). May also have serine/threonine protein kinase activity. Required for longitudinal bone growth through regulation of chondrocyte differentiation. May be indirectly involved in protein transport from the Golgi apparatus to the plasma membrane (By similarity).
Sequence
MRRRRAAVAA GFCASFLLGS VLNVLFAPGS EPPRPGQSPE PSPAPGPGRR GGRGELARQI 60
RARYEEVQRY SRGGPGPGAG RPERRRLMDL APGGPGLPRP RPPWARPLSD GAPGWPPAPG 120
PGSPGPGPRL GCAALRNVSG AQYMGSGYTK AVYRVRLPGG AAVALKAVDF SGHDLGSCVR 180
EFGVRRGCYR LAAHKLLKEM VLLERLRHPN VLQLYGYCYQ DSEDIPDTLT TITELGAPVE 240
MIQLLQTSWE DRFRICLSLG RLLHHLAHSP LGSVTLLDFR PRQFVLVDGE LKVTDLDDAR 300
VEETPCAGST DCILEFPARN FTLPCSAQGW CEGMNEKRNL YNAYRFFFTY LLPHSAPPSL 360
RPLLDSIVNA TGELAWGVDE TLAQLEKVLH LYRSGQYLQN STASSSTEYQ CIPDSTIPQE 420
DYRCWPSYHH GSCLLSVFNL AEAVDVCESH AQCRAFVVTN QTTWTGRQLV FFKTGWSQVV 480
PDPNKTTYVK ASG 493

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPKDCC102177986A0A452E7H5Capra hircusPredictionMore>>
1:1 orthologPKDCC91461Q504Y2Homo sapiensPredictionMore>>
1:1 orthologPkdcc106522Q5RJI4CPOMus musculusPublicationMore>>
1:1 orthologPKDCCH2QHT1Pan troglodytesPredictionMore>>
1:1 orthologPKDCCF1S4U8Sus scrofaPredictionMore>>
1:1 orthologpkdccaF1QBU5Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0004672 protein kinase activityISS
GO:0004715 non-membrane spanning protein tyrosine kinase activityIDA
GO:0005524 ATP bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0001501 skeletal system developmentIEA
GO:0015031 protein transportIEA
GO:0018108 peptidyl-tyrosine phosphorylationIDA
GO:0030154 cell differentiationIEA
GO:0030282 bone mineralizationIEA
GO:0030501 positive regulation of bone mineralizationISS
GO:0032332 positive regulation of chondrocyte differentiationISS
GO:0035108 limb morphogenesisIEA
GO:0035264 multicellular organism growthIEA
GO:0042997 negative regulation of Golgi to plasma membrane protein transportISS
GO:0048286 lung alveolus developmentISS
GO:0048566 embryonic digestive tract developmentISS
GO:0060021 roof of mouth developmentISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionIDA
GO:0005794 Golgi apparatusISS

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0067 ATP-binding
KW-0217 Developmental protein
KW-0221 Differentiation
KW-0325 Glycoprotein
KW-0333 Golgi apparatus
KW-0418 Kinase
KW-0547 Nucleotide-binding
KW-0892 Osteogenesis
KW-0597 Phosphoprotein
KW-0653 Protein transport
KW-1185 Reference proteome
KW-0964 Secreted
KW-0732 Signal
KW-0808 Transferase
KW-0813 Transport
KW-0829 Tyrosine-protein kinase

Interpro

InterPro ID InterPro Term
IPR022049 FAM69_kinase_dom
IPR011009 Kinase-like_dom_sf
IPR042983 PKDCC
IPR000719 Prot_kinase_dom

PROSITE

PROSITE ID PROSITE Term
PS50011 PROTEIN_KINASE_DOM

Pfam

Pfam ID Pfam Term
PF12260 PIP49_C

Protein-protein interaction

Protein-miRNA interaction