Gene: ARHGAP29

Basic information

Tag Content
Uniprot ID Q52LW3; O15463; Q59H86; Q5VYZ0; Q6NVX2; Q8TBI6;
Entrez ID 9411
Genbank protein ID AAH93767.1; BAD92110.1; AAH93741.1; AAH22483.1; EAW73052.1; AAH67839.1; AAB81012.1; EAW73051.1;
Genbank nucleotide ID XM_011542439.2; NM_004815.3; NM_001328664.1;
Ensembl protein ID ENSP00000359237; ENSP00000260526;
Ensembl nucleotide ID ENSG00000137962
Gene name Rho GTPase-activating protein 29
Gene symbol ARHGAP29
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 27033726; 25704602; 25081408; 25512736; 23008150; 25163644;
Functional description GTPase activator for the Rho-type GTPases by converting them to an inactive GDP-bound state. Has strong activity toward RHOA, and weaker activity toward RAC1 and CDC42. May act as a specific effector of RAP2A to regulate Rho. In concert with RASIP1, suppresses RhoA signaling and dampens ROCK and MYH9 activities in endothelial cells and plays an essential role in blood vessel tubulogenesis.
Sequence
MIAHKQKKTK KKRAWASGQL STDITTSEMG LKSLSSNSIF DPDYIKELVN DIRKFSHMLL 60
YLKEAIFSDC FKEVIHIRLE ELLRVLKSIM NKHQNLNSVD LQNAAEMLTA KVKAVNFTEV 120
NEENKNDLFQ EVFSSIETLA FTFGNILTNF LMGDVGNDSL LRLPVSRETK SFENVSVESV 180
DSSSEKGNFS PLELDNVLLK NTDSIELALS YAKTWSKYTK NIVSWVEKKL NLELESTRNM 240
VKLAEATRTN IGIQEFMPLQ SLFTNALLND IESSHLLQQT IAALQANKFV QPLLGRKNEM 300
EKQRKEIKEL WKQEQNKMLE AENALKKAKL LCMQRQDEYE KAKSSMFRAE EEHLSSSGGL 360
AKNLNKQLEK KRRLEEEALQ KVEEANELYK VCVTNVEERR NDLENTKREI LAQLRTLVFQ 420
CDLTLKAVTV NLFHMQHLQA ASLADSLQSL CDSAKLYDPG QEYSEFVKAT NSTEEEKVDG 480
NVNKHLNSSQ PSGFGPANSL EDVVRLPDSS NKIEEDRCSN SADITGPSFI RSWTFGMFSD 540
SESTGGSSES RSLDSESISP GDFHRKLPRT PSSGTMSSAD DLDEREPPSP SETGPNSLGT 600
FKKTLMSKAA LTHKFRKLRS PTKCRDCEGI VVFQGVECEE CLLVCHRKCL ENLVIICGHQ 660
KLPGKIHLFG AEFTQVAKKE PDGIPFILKI CASEIENRAL CLQGIYRVCG NKIKTEKLCQ 720
ALENGMHLVD ISEFSSHDIC DVLKLYLRQL PEPFILFRLY KEFIDLAKEI QHVNEEQETK 780
KNSLEDKKWP NMCIEINRIL LKSKDLLRQL PASNFNSLHF LIVHLKRVVD HAEENKMNSK 840
NLGVIFGPSL IRPRPTTAPI TISSLAEYSN QARLVEFLIT YSQKIFDGSL QPQDVMCSIG 900
VVDQGCFPKP LLSPEERDIE RSMKSLFFSS KEDIHTSESE SKIFERATSF EESERKQNAL 960
GKCDACLSDK AQLLLDQEAE SASQKIEDGK TPKPLSLKSD RSTNNVERHT PRTKIRPVSL 1020
PVDRLLLASP PNERNGRNMG NVNLDKFCKN PAFEGVNRKD AATTVCSKFN GFDQQTLQKI 1080
QDKQYEQNSL TAKTTMIMPS ALQEKGVTTS LQISGDHSIN ATQPSKPYAE PVRSVREASE 1140
RRSSDSYPLA PVRAPRTLQP QHWTTFYKPH APIISIRGNE EKPASPSAAV PPGTDHDPHG 1200
LVVKSMPDPD KASACPGQAT GQPKEDSEEL GLPDVNPMCQ RPRLKRMQQF EDLEGEIPQF 1260
V 1261

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologARHGAP29504657A7YY57Bos taurusPredictionMore>>
1:1 orthologARHGAP29479940E2RRA9Canis lupus familiarisPredictionMore>>
1:1 orthologARHGAP29A0A452E8A9Capra hircusPredictionMore>>
1:1 orthologARHGAP299411Q52LW3CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologArhgap29214137Q8CGF1CPOE13.5Mus musculusPublicationMore>>
1:1 orthologARHGAP29A0A2I3TR42Pan troglodytesPredictionMore>>
1:1 orthologARHGAP29100152734F1S540Sus scrofaPredictionMore>>
1:1 orthologARHGAP29100351674G1SXZ8Oryctolagus cuniculusPredictionMore>>
1:1 orthologArhgap29310833F1LPZ1Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
ARHGAP29c. 94A>TDNA extraction and polymerase chain reaction25512736
ARHGAP29rs1541098Genotyping25163644
ARHGAP29rs3789688Genotyping25163644
ARHGAP29rs1576593Genotyping25163644
ARHGAP29rs560426GWAS3221112
ARHGAP29c.62_63delCT; p.S21Yfs*20Sequencing23008150
ARHGAP29c.76A>G; p.Thr26AlaSequencing23008150
ARHGAP29c.137A>G; p.Lys46ArgSequencing23008150
ARHGAP29c.888G>C; p.Arg296SerSequencing23008150
ARHGAP29c.976A>T; p.Lys326*Sequencing23008150
ARHGAP29rs148959325; c.1252G>A; p.Val418IleSequencing23008150
ARHGAP29c.1847G>A; p.Arg616HisSequencing23008150
ARHGAP29c1865C>T; p.Thr622MetSequencing23008150
ARHGAP29c.2017T>G; p.Phe673ValSequencing23008150
ARHGAP29rs113546321; c.2864G>A; p.Arg955HisSequencing23008150
ARHGAP29rs140638899; c.3023G>A; p.Arg1008LysSequencing23008150
ARHGAP29c.3425G>A; p.Arg1142GlnSequencing23008150
ARHGAP29c.3604G>T; p.Val1202LeuSequencing23008150
ARHGAP29rs1999272; c.3764G>A; p.Asp1255GlySequencing23008150
ARHGAP29c.2492G>A; p.Ala832ThrSequencing23008150
ARHGAP29c.2533A>G; p.Ile845ValSequencing23008150
ARHGAP29c.976A>T; p.Lys326*GWAS and Sanger sequencing25704602
ARHGAP29c.1939C>T; p.Arg647*GWAS and Sanger sequencing25704602
ARHGAP29c.2367G>T; p.Trp789*GWAS and Sanger sequencing25704602
ARHGAP29c.3118G>T; p.Gly1040*GWAS and Sanger sequencing25704602
ARHGAP29c.1920+1G>AChromoosme miroarray; WES and Sanger sequencing32698641
ARHGAP29c.2864G>A; p.Arg955HisGWAS25081408
ARHGAP29c.2738C>A; p.Ser913LeuGWAS25081408
ARHGAP29rs481931C>AGWAS28232668
ARHGAP29rs4147803C>GGWAS28232668
ARHGAP29c.2615C>T; p.A872VWES33150183
ARHGAP29rs4147882Genotyping and GWAS27033726
ARHGAP29rs12088309Genotyping and GWAS27033726
ARHGAP29rs3789431Genotyping and GWAS27033726

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005096 GTPase activator activityIEA
GO:0030165 PDZ domain bindingIDA
GO:0046872 metal ion bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0007266 Rho protein signal transductionTAS
GO:0043547 positive regulation of GTPase activityIEA
GO:0051056 regulation of small GTPase mediated signal transductionTAS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005737 cytoplasmIDA
GO:0005829 cytosolTAS
GO:0032991 protein-containing complexIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-194315 Signaling by Rho GTPasesTAS
R-HSA-194840 Rho GTPase cycleTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0175 Coiled coil
KW-0903 Direct protein sequencing
KW-0343 GTPase activation
KW-0479 Metal-binding
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR027267 AH/BAR_dom_sf
IPR031160 F_BAR
IPR002219 PE/DAG-bd
IPR008936 Rho_GTPase_activation_prot
IPR000198 RhoGAP_dom

PROSITE

PROSITE ID PROSITE Term
PS51741 F_BAR
PS50238 RHOGAP
PS00479 ZF_DAG_PE_1
PS50081 ZF_DAG_PE_2

Pfam

Pfam ID Pfam Term
PF00130 C1_1
PF00620 RhoGAP

Protein-protein interaction

Protein-miRNA interaction