Gene: SYNE3

Basic information

Tag Content
Uniprot ID Q6ZMZ3; A6H8H3; Q86SX5; Q8N7G8;
Entrez ID 161176
Genbank protein ID BAD18582.1; CAD62365.1; BAC05312.1; AAI46605.1;
Genbank nucleotide ID XM_005267377.3; NM_152592.4; XM_017021056.1; XM_006720063.3;
Ensembl protein ID ENSP00000450562; ENSP00000334308; ENSP00000450774;
Ensembl nucleotide ID ENSG00000176438
Gene name Nesprin-3
Gene symbol SYNE3
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 26449438
Functional description As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning. Probable anchoring protein which tethers the nucleus to the cytoskeleton by binding PLEC which can associate with the intermediate filament system. Plays a role in the regulation of aortic epithelial cell morphology, and is required for flow-induced centrosome polarization and directional migration in aortic endothelial cells.
Sequence
MTQQPQDDFD RSVEDAQAWM KAVQDQLQVN DNTQGPRAAL EARLWETEKI CQLEPEGRVR 60
VDLVLRMAEA LLACCPGDQK PGILARLKDI KAQWEETVTY MTHCHSRIEW VWLHWSEYLL 120
ARDEFYRWFQ KMMVTLEPHI ELQLGLKEKQ WQLSHAQVLL HNVDNQAVLL DRLLEEAASL 180
FNRIGDPSVD EDAQKRMKAE YDAVKAKAQK RVDLLEQVAR EHEEYQAGVD EFQLWLKAVV 240
EKVNGCLGRN CKLPITQRLS TLQDIAKDFP RGEESLETLE EQSAGVIRNT SPLGAEKITG 300
ELEEMRKVLE KLRALWEEEE ERLRGLLRSR GAWEQQIKQL EAELSEFRMV LQRLAQEGLQ 360
PAAKAGTEDE LVAHWRRYSA TRAALASEEP RVDRLQAQLK ELIVFPHNLK PLSDSVIATI 420
QEYQSLKVKS ARLRNAAAVE LWQHFQRPLQ DLQLWKALAQ RLLEVTASLP DLPSLHTFLP 480
QIEAALMESS RLKELLTMLQ LKKDLLIGIF GQERATALLE QVAGSMRDRD LLHNSLLQRK 540
SKLQSLLAQH KDFGAAFEPL QRKLLDLQVR VQAEKGLQRD LPGKQAQLSR LQGLQEEGLD 600
LGAQMEAARP LVQENPNHQH KMDQLSSDFQ ALQRSLEDLV DRCRQSVQEH CTFSHQLLEL 660
RQWIVVTTQK LEAHRGEAGP GDAESQEAEF ERLVAEFPEK EAQLSLVEAQ GWLVMEKSSP 720
EGAAVVQEEL RELAESWRAL RLLEESLLSL IRNWHLQRME VDSGKKMVFT NNIPKSGFLI 780
NPMDPIPRHR RRANLLQEEE GSHEDFSQLL RNFGQWLQVE NSKLVRIIAM RTSTAEDLRT 840
RKSKLQELEA RVPEGQHLFE NLLRLGPARG TSDELEDLRY QWMLYKSKLK DSGHLLTQSS 900
PGEPTGFQKT RRWRGLGSLF RRACCVALPL QLLLLLFLLL LFLLPIREED RSCTLANNFA 960
RSFTLMLRYN GPPPT 975

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologSYNE3520207A0A3Q1MN88Bos taurusPredictionMore>>
1:1 orthologSYNE3A0A452EF11Capra hircusPredictionMore>>
1:1 orthologSYNE3161176Q6ZMZ3Homo sapiensPublicationMore>>
1:1 orthologSyne3212073Q4FZC9Mus musculusPredictionMore>>
1:1 orthologSYNE3H2Q8V7Pan troglodytesPredictionMore>>
1:1 orthologSyne3D3ZD24Rattus norvegicusPredictionMore>>
1:1 orthologsyne3100009645X1WGA9Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI
GO:0051015 actin filament bindingIBA
GO:0051015 actin filament bindingIMP

GO:Biological Process

GO ID GO Term Evidence
GO:0007010 cytoskeleton organizationIMP
GO:0007097 nuclear migrationIBA
GO:0008360 regulation of cell shapeIMP
GO:0051647 nucleus localizationIBA
GO:0090150 establishment of protein localization to membraneIDA
GO:0090286 cytoskeletal anchoring at nuclear membraneIDA
GO:0090286 cytoskeletal anchoring at nuclear membraneIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005623 cellIEA
GO:0005635 nuclear envelopeIDA
GO:0005640 nuclear outer membraneIBA
GO:0005737 cytoplasmIBA
GO:0005791 rough endoplasmic reticulumIEA
GO:0016020 membraneHDA
GO:0016021 integral component of membraneIEA
GO:0031965 nuclear membraneIDA
GO:0034993 meiotic nuclear membrane microtubule tethering complexIDA
GO:0034993 meiotic nuclear membrane microtubule tethering complexIBA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0175 Coiled coil
KW-1015 Disulfide bond
KW-0256 Endoplasmic reticulum
KW-0472 Membrane
KW-0539 Nucleus
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR012315 KASH
IPR018159 Spectrin/alpha-actinin
IPR002017 Spectrin_repeat
IPR030267 SYNE3

PROSITE

PROSITE ID PROSITE Term
PS51049 KASH

Pfam

Pfam ID Pfam Term
PF10541 KASH
PF00435 Spectrin

Protein-protein interaction

Protein-miRNA interaction