Gene: EVC2

Basic information

Tag Content
Uniprot ID Q86UK5; Q86YT3; Q86YT4; Q8NG49;
Entrez ID 132884
Genbank protein ID BAC06590.1; AAN86578.1; AAN86577.1; AAO22066.1;
Genbank nucleotide ID NM_001166136.1; NM_147127.4; XM_017007737.1; XM_017007736.1;
Ensembl protein ID ENSP00000311683; ENSP00000342144;
Ensembl nucleotide ID ENSG00000173040
Gene name Limbin
Gene symbol EVC2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 20087401
Functional description Component of the EvC complex that positively regulates ciliary Hedgehog (Hh) signaling. Plays a critical role in bone formation and skeletal development. May be involved in early embryonic morphogenesis.
Sequence
MDPSGSRGRP TWVLAGGLLA VALALGGRGC LGASSRPRWR PLGAQPPRDP QVAPRSGPGL 60
RIPPGRSGAG PESSTQDLPC MIWPKVECCH FKTAVEAPLG MKLDKKMEVF IPLSTSAASS 120
GPWAHSLFAF IPSWPKKNLF KRESPITHRL YGDISREVQG TSENGVIFQK CALVSGSSEA 180
QTARIWLLVN NTKTTSSANL SELLLLDSIA GLTIWDSVGN RTSEGFQAFS KKFLQVGDAF 240
AVSYAATLQA GDLGNGESLK LPAQLTFQSS SRNRTQLKVL FSITAEENVT VLPHHGLHAA 300
GFFIAFLLSL VLTWAALFLM VRYQCLKGNM LTRHRVWQYE SKLEPLPFTS ADGVNEDLSL 360
NDQMIDILSS EDPGSMLQAL EELEIATLNR ADADLEACRT QISKDIIALL LKNLTSSGHL 420
SPQVERKMSA VFKKQFLLLE NEIQEEYDRK MVALTAECDL ETRKKMENQY QREMMAMEEA 480
EELLKRAGER SAVECSNLLR TLHGLEQEHL RKSLALQQEE DFAKAHRQLA VFQRNELHSI 540
FFTQIKSAIF KGELKPEAAK MLLQNYSKIQ ENVEELMDFF QASKRYHLSK RFGHREYLVQ 600
NLQSSETRVQ GLLSTAAAQL THLIQKHERA GYLDEDQMEM LLERAQTEVF SIKQKLDNDL 660
KQEKKKLHQK LITKRRRELL QKHREQRREQ ASVGEAFRTV EDAGQYLHQK RSLMEEHGAT 720
LEELQERLDQ AALDDLRTLT LSLFEKATDE LRRLQNSAMT QELLKRGVPW LFLQQILEEH 780
GKEMAARAEQ LEGEERDRDQ EGVQSVRQRL KDDAPEAVTE EQAELRRWEH LIFMKLCSSV 840
FSLSEEELLR MRQEVHGCFA QMDRSLALPK IRARVLLQQF QTAWREAEFV KLDQAVAAPE 900
LQQQSKVRKS RSKSKSKGEL LKKCIEDKIH LCEEQASEDL VEKVRGELLR ERVQRMEAQE 960
GGFAQSLVAL QFQKASRVTE TLSAYTALLS IQDLLLEELS ASEMLTKSAC TQILESHSRE 1020
LQELERKLED QLVQQEAAQQ QQALASWQQW VADGPGILNE PGEVDSERQV STVLHQALSK 1080
SQTLLEQHQQ CLREEQQNSV VLEDLLENME ADTFATLCSQ ELRLASYLAR MAMVPGATLR 1140
RLLSVVLPTA SQPQLLALLD SATERHVDHA AESDGGAEQA DVGRRRKHQS WWQALDGKLR 1200
GDLISRGLEK MLWARKRKQS ILKKTCLPLR ERMIFSGKGS WPHLSLEPIG ELAPVPIVGA 1260
ETIDLLNTGE KLFIFRNPKE PEISLHVPPR KKKNFLNAKK AMRALGMD 1308

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologEVC2F1PZ45Canis lupus familiarisPredictionMore>>
1:1 orthologEVC2A0A452ELR2Capra hircusPredictionMore>>
1:1 orthologEVC2132884Q86UK5Homo sapiensPublicationMore>>
1:1 orthologEvc268525Q8K1G2Mus musculusPredictionMore>>
1:1 orthologEVC2461676A0A2I3S1F9Pan troglodytesPredictionMore>>
1:1 orthologEvc2289711D3ZWN3Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence

GO:Biological Process

GO ID GO Term Evidence
GO:0007224 smoothened signaling pathwayISS

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusISS
GO:0005634 nucleusHDA
GO:0005737 cytoplasmIEA
GO:0005856 cytoskeletonIEA
GO:0005929 ciliumISS
GO:0016021 integral component of membraneIEA
GO:0060170 ciliary membraneTAS
GO:0098797 plasma membrane protein complexIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-5358351 Signaling by HedgehogTAS
R-HSA-5358351 Signaling by HedgehogIEA
R-HSA-5632684 Hedgehog 'on' stateTAS
R-HSA-5632684 Hedgehog 'on' stateIEA
R-HSA-5635838 Activation of SMOIEA
R-HSA-5635838 Activation of SMOTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-1003 Cell membrane
KW-0966 Cell projection
KW-1186 Ciliopathy
KW-0969 Cilium
KW-0175 Coiled coil
KW-0963 Cytoplasm
KW-0206 Cytoskeleton
KW-0225 Disease mutation
KW-0242 Dwarfism
KW-0038 Ectodermal dysplasia
KW-0325 Glycoprotein
KW-0472 Membrane
KW-0539 Nucleus
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR022076 Limbin
IPR026501 Limbin/Ellis-van_Creveld

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF12297 EVC2_like

Protein-protein interaction

Protein-miRNA interaction