Gene: ASXL1

Basic information

Tag Content
Uniprot ID Q8IXJ9; B2RP59; Q5JWS9; Q8IYY7; Q9H466; Q9NQF8; Q9UFJ0; Q9UFP8; Q9Y2I4;
Entrez ID 171023
Genbank protein ID AAI37279.1; CAB56029.2; CAB55975.1; CAD27708.1; BAA76822.2; AAI37281.1; AAH33284.1;
Genbank nucleotide ID NM_015338.5
Ensembl protein ID ENSP00000364839; ENSP00000481978; ENSP00000480487;
Ensembl nucleotide ID ENSG00000171456
Gene name Polycomb group protein ASXL1
Gene symbol ASXL1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Probable Polycomb group (PcG) protein involved in transcriptional regulation mediated by ligand-bound nuclear hormone receptors, such as retinoic acid receptors (RARs) and peroxisome proliferator-activated receptor gamma (PPARG) (PubMed:16606617). Acts as coactivator of RARA and RXRA through association with NCOA1 (PubMed:16606617). Acts as corepressor for PPARG and suppresses its adipocyte differentiation-inducing activity (By similarity). Non-catalytic component of the PR-DUB complex, a complex that specifically mediates deubiquitination of histone H2A monoubiquitinated at 'Lys-119' (H2AK119ub1) (PubMed:20436459). Acts as a sensor of N(6)-methyladenosine methylation on DNA (m6A): recognizes and binds m6A DNA, leading to its ubiquitination and degradation by TRIP12, thereby inactivating the PR-DUB complex and regulating Polycomb silencing (PubMed:30982744).
Sequence
MKDKQKKKKE RTWAEAARLV LENYSDAPMT PKQILQVIEA EGLKEMRSGT SPLACLNAML 60
HSNSRGGEGL FYKLPGRISL FTLKKDALQW SRHPATVEGE EPEDTADVES CGSNEASTVS 120
GENDVSLDET SSNASCSTES QSRPLSNPRD SYRASSQANK QKKKTGVMLP RVVLTPLKVN 180
GAHVESASGF SGCHADGESG SPSSSSSGSL ALGSAAIRGQ AEVTQDPAPL LRGFRKPATG 240
QMKRNRGEEI DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL 300
LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW KEKFFEDYYG 360
QKLGLTKEES LQQNVGQEEA EIKSGLCVPG ESVRIQRGPA TRQRDGHFKK RSRPDLRTRA 420
RRNLYKKQES EQAGVAKDAK SVASDVPLYK DGEAKTDPAG LSSPHLPGTS SAAPDLEGPE 480
FPVESVASRI QAEPDNLARA SASPDRIPSL PQETVDQEPK DQKRKSFEQA ASASFPEKKP 540
RLEDRQSFRN TIESVHTEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIIPT 600
TESSCRGWTG ARTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG GGGATDEGGG 660
RGSSSGDGGE ACGHPEPRGG PSTPGKCTSD LQRTQLLPPY PLNGEHTQAG TAMSRARRED 720
LPSLRKEESC LLQRATVGLT DGLGDASQLP VAPTGDQPCQ ALPLLSSQTS VAERLVEQPQ 780
LHPDVRTECE SGTTSWESDD EEQGPTVPAD NGPIPSLVGD DTLEKGTGQA LDSHPTMKDP 840
VNVTPSSTPE SSPTDCLQNR AFDDELGLGG SCPPMRESDT RQENLKTKAL VSNSSLHWIP 900
IPSNDEVVKQ PKPESREHIP SVEPQVGEEW EKAAPTPPAL PGDLTAEEGL DPLDSLTSLW 960
TVPSRGGSDS NGSYCQQVDI EKLKINGDSE ALSPHGESTD TASDFEGHLT EDSSEADTRE 1020
AAVTKGSSVD KDEKPNWNQS APLSKVNGDM RLVTRTDGMV APQSWVSRVC AVRQKIPDSL 1080
LLASTEYQPR AVCLSMPGSS VEATNPLVMQ LLQGSLPLEK VLPPAHDDSM SESPQVPLTK 1140
DQSHGSLRMG SLHGLGKNSG MVDGSSPSSL RALKEPLLPD SCETGTGLAR IEATQAPGAP 1200
QKNCKAVPSF DSLHPVTNPI TSSRKLEEMD SKEQFSSFSC EDQKEVRAMS QDSNSNAAPG 1260
KSPGDLTTSR TPRFSSPNVI SFGPEQTGRA LGDQSNVTGQ GKKLFGSGNV AATLQRPRPA 1320
DPMPLPAEIP PVFPSGKLGP STNSMSGGVQ TPREDWAPKP HAFVGSVKNE KTFVGGPLKA 1380
NAENRKATGH SPLELVGHLE GMPFVMDLPF WKLPREPGKG LSEPLEPSSL PSQLSIKQAF 1440
YGKLSKLQLS STSFNYSSSS PTFPKGLAGS VVQLSHKANF GASHSASLSL QMFTDSSTVE 1500
SISLQCACSL KAMIMCQGCG AFCHDDCIGP SKLCVLCLVV R 1541

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologASXL1A0A452G2F5Capra hircusPredictionMore>>
1:1 orthologASXL1171023Q8IXJ9Homo sapiensPredictionMore>>
1:1 orthologAsxl1228790P59598CPOMus musculusPublicationMore>>
1:1 orthologASXL1H2R3B7Pan troglodytesPredictionMore>>
1:1 orthologAsxl1A0A0G2JU33Rattus norvegicusPredictionMore>>
1:1 orthologasxl1F1RC47Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIEA
GO:0003682 chromatin bindingIBA
GO:0003713 transcription coactivator activityISS
GO:0005515 protein bindingIPI
GO:0042974 retinoic acid receptor bindingISS
GO:0042975 peroxisome proliferator activated receptor bindingISS
GO:0042975 peroxisome proliferator activated receptor bindingIBA
GO:0046872 metal ion bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0000902 cell morphogenesisIEA
GO:0003007 heart morphogenesisIEA
GO:0006351 transcription, DNA-templatedIEA
GO:0009887 animal organ morphogenesisIBA
GO:0010888 negative regulation of lipid storageIEA
GO:0016579 protein deubiquitinationTAS
GO:0030097 hemopoiesisIEA
GO:0032526 response to retinoic acidISS
GO:0035359 negative regulation of peroxisome proliferator activated receptor signaling pathwayISS
GO:0035522 monoubiquitinated histone H2A deubiquitinationIDA
GO:0035564 regulation of kidney sizeIEA
GO:0045599 negative regulation of fat cell differentiationISS
GO:0045944 positive regulation of transcription by RNA polymerase IIISS
GO:0045944 positive regulation of transcription by RNA polymerase IIIBA
GO:0048386 positive regulation of retinoic acid receptor signaling pathwayISS
GO:0048538 thymus developmentIEA
GO:0048539 bone marrow developmentIEA
GO:0048872 homeostasis of number of cellsIEA
GO:0060430 lung saccule developmentIEA
GO:0072015 glomerular visceral epithelial cell developmentIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005654 nucleoplasmTAS
GO:0035517 PR-DUB complexIDA
GO:0035517 PR-DUB complexIBA
GO:0000790 nuclear chromatinIBA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-5688426 DeubiquitinationTAS
R-HSA-5689603 UCH proteinasesTAS
R-HSA-597592 Post-translational protein modificationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0156 Chromatin regulator
KW-0989 Craniosynostosis
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0832 Ubl conjugation
KW-0833 Ubl conjugation pathway
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR026905 ASX-like_PHD
IPR024811 ASX/ASX-like
IPR028020 ASXH
IPR024815 ASXL1
IPR007759 HB1/Asxl_HTH

PROSITE

PROSITE ID PROSITE Term
PS51916 DEUBAD
PS51913 HTH_HARE

Pfam

Pfam ID Pfam Term
PF13919 ASXH
PF05066 HARE-HTH
PF13922 PHD_3

Protein-protein interaction

Protein-miRNA interaction