Gene: PHC2

Basic information

Tag Content
Uniprot ID Q8IXK0; A1L4Q1; A8KA40; D3DPR2; Q2TAL3; Q5T0C1; Q6NUJ6; Q6ZQR1; Q8N306; Q8TAG8; Q96BL4; Q9Y4Y7;
Entrez ID 1912
Genbank protein ID AAH15450.1; AAH68573.1; AAH29269.1; CAD11673.1; AAI10864.2; AAI30631.1; CAB44779.1; EAX07458.1; AAH28396.3; BAC87622.1; EAX07459.1; BAF85594.1; EAX07457.1; AAH92492.1;
Genbank nucleotide ID XM_017000518.1; XM_017000516.1; NM_198040.2; NM_004427.3; XM_005270570.1; XM_017000517.1;
Ensembl protein ID ENSP00000362517; ENSP00000257118;
Ensembl nucleotide ID ENSG00000134686
Gene name Polyhomeotic-like protein 2
Gene symbol PHC2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility.
Sequence
MENELPVPHT SSSACATSST SGASSSSGCN NSSSGGSGRP TGPQISVYSG IPDRQTVQVI 60
QQALHRQPST AAQYLQQMYA AQQQHLMLQT AALQQQHLSS AQLQSLAAVQ QASLVSNRQG 120
STSGSNVSAQ APAQSSSINL AASPAAAQLL NRAQSVNSAA ASGIAQQAVL LGNTSSPALT 180
ASQAQMYLRA QMLIFTPTAT VATVQPELGT GSPARPPTPA QVQNLTLRTQ QTPAAAASGP 240
TPTQPVLPSL ALKPTPGGSQ PLPTPAQSRN TAQASPAGAK PGIADSVMEP HKKGDGNSSV 300
PGSMEGRAGL SRTVPAVAAH PLIAPAYAQL QPHQLLPQPS SKHLQPQFVI QQQPQPQQQQ 360
PPPQQSRPVL QAEPHPQLAS VSPSVALQPS SEAHAMPLGP VTPALPLQCP TANLHKPGGS 420
QQCHPPTPDT GPQNGHPEGV PHTPQRRFQH TSAVILQLQP ASPPQQCVPD DWKEVAPGEK 480
SVPETRSGPS PHQQAIVTAM PGGLPVPTSP NIQPSPAHET GQGIVHALTD LSSPGMTSGN 540
GNSASSIAGT APQNGENKPP QAIVKPQILT HVIEGFVIQE GAEPFPVGRS SLLVGNLKKK 600
YAQGFLPEKL PQQDHTTTTD SEMEEPYLQE SKEEGAPLKL KCELCGRVDF AYKFKRSKRF 660
CSMACAKRYN VGCTKRVGLF HSDRSKLQKA GAATHNRRRA SKASLPPLTK DTKKQPTGTV 720
PLSVTAALQL THSQEDSSRC SDNSSYEEPL SPISASSSTS RRRQGQRDLE LPDMHMRDLV 780
GMGHHFLPSE PTKWNVEDVY EFIRSLPGCQ EIAEEFRAQE IDGQALLLLK EDHLMSAMNI 840
KLGPALKIYA RISMLKDS 858

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPHC2537511E1BFG7Bos taurusPredictionMore>>
1:1 orthologPHC2487297J9P8A4Canis lupus familiarisPredictionMore>>
1:1 orthologPHC2A0A452F0Q9Capra hircusPredictionMore>>
1:1 orthologPHC21912Q8IXK0Homo sapiensPredictionMore>>
1:1 orthologPhc254383Q9QWH1CPOMus musculusPublicationMore>>
1:1 orthologPHC2456729H2PYL7Pan troglodytesPredictionMore>>
1:1 orthologPHC2I3LIR0Sus scrofaPredictionMore>>
1:1 orthologPHC2100351541G1T576Oryctolagus cuniculusPredictionMore>>
1:1 orthologPhc2313038D4A0M3Rattus norvegicusPredictionMore>>
1:1 orthologphc2b394177F6P2R0Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIEA
GO:0005515 protein bindingIPI
GO:0008270 zinc ion bindingIEA
GO:0042802 identical protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0007275 multicellular organism developmentIEA
GO:0007283 spermatogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000792 heterochromatinIEA
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0031519 PcG protein complexIDA
GO:0035102 PRC1 complexIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1257604 PIP3 activates AKT signalingIEA
R-HSA-1257604 PIP3 activates AKT signalingTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-162582 Signal TransductionTAS
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-2262752 Cellular responses to stressTAS
R-HSA-2559580 Oxidative Stress Induced SenescenceTAS
R-HSA-2559583 Cellular SenescenceTAS
R-HSA-2990846 SUMOylationTAS
R-HSA-2990846 SUMOylationIEA
R-HSA-3108214 SUMOylation of DNA damage response and repair proteinsTAS
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteinsTAS
R-HSA-3108232 SUMO E3 ligases SUMOylate target proteinsIEA
R-HSA-3899300 SUMOylation of transcription cofactorsTAS
R-HSA-392499 Metabolism of proteinsTAS
R-HSA-392499 Metabolism of proteinsIEA
R-HSA-4551638 SUMOylation of chromatin organization proteinsTAS
R-HSA-4570464 SUMOylation of RNA binding proteinsTAS
R-HSA-4655427 SUMOylation of DNA methylation proteinsIEA
R-HSA-597592 Post-translational protein modificationTAS
R-HSA-597592 Post-translational protein modificationIEA
R-HSA-6807070 PTEN RegulationIEA
R-HSA-6807070 PTEN RegulationTAS
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-74160 Gene expression (Transcription)TAS
R-HSA-8878171 Transcriptional regulation by RUNX1TAS
R-HSA-8939243 RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not knownTAS
R-HSA-8943724 Regulation of PTEN gene transcriptionIEA
R-HSA-8943724 Regulation of PTEN gene transcriptionTAS
R-HSA-8953897 Cellular responses to external stimuliTAS
R-HSA-9006925 Intracellular signaling by second messengersIEA
R-HSA-9006925 Intracellular signaling by second messengersTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0217 Developmental protein
KW-0238 DNA-binding
KW-1017 Isopeptide bond
KW-0479 Metal-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0832 Ubl conjugation
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR001660 SAM
IPR013761 SAM/pointed_sf
IPR012313 Znf_FCS
IPR038603 Znf_FCS_sf

PROSITE

PROSITE ID PROSITE Term
PS50105 SAM_DOMAIN
PS51024 ZF_FCS

Pfam

Pfam ID Pfam Term
PF00536 SAM_1

Protein-protein interaction

Protein-miRNA interaction