Gene: WDR19

Basic information

Tag Content
Uniprot ID Q8NEZ3; B5MEF2; Q8N5B4; Q9H5S0; Q9HCD4;
Entrez ID 57728
Genbank protein ID AAK38745.1; EAW92921.1; BAB13464.1; AAH32578.1; BAB15550.1;
Genbank nucleotide ID NM_001317924.1; NM_025132.3;
Ensembl protein ID ENSP00000382717
Ensembl nucleotide ID ENSG00000157796
Gene name WD repeat-containing protein 19
Gene symbol WDR19
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description As component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs), it is involved in cilia function and/or assembly (PubMed:20889716). Essential for functional IFT-A assembly and ciliary entry of GPCRs (PubMed:20889716). Associates with the BBSome complex to mediate ciliary transport (By similarity).
Sequence
MKRIFSLLEK TWLGAPIQFA WQKTSGNYLA VTGADYIVKI FDRHGQKRSE INLPGNCVAM 60
DWDKDGDVLA VIAEKSSCIY LWDANTNKTS QLDNGMRDQM SFLLWSKVGS FLAVGTVKGN 120
LLIYNHQTSR KIPVLGKHTK RITCGCWNAE NLLALGGEDK MITVSNQEGD TIRQTQVRSE 180
PSNMQFFLMK MDDRTSAAES MISVVLGKKT LFFLNLNEPD NPADLEFQQD FGNIVCYNWY 240
GDGRIMIGFS CGHFVVISTH TGELGQEIFQ ARNHKDNLTS IAVSQTLNKV ATCGDNCIKI 300
QDLVDLKDMY VILNLDEENK GLGTLSWTDD GQLLALSTQR GSLHVFLTKL PILGDACSTR 360
IAYLTSLLEV TVANPVEGEL PITVSVDVEP NFVAVGLYHL AVGMNNRAWF YVLGENAVKK 420
LKDMEYLGTV ASICLHSDYA AALFEGKVQL HLIESEILDA QEERETRLFP AVDDKCRILC 480
HALTSDFLIY GTDTGVVQYF YIEDWQFVND YRHPVSVKKI FPDPNGTRLV FIDEKSDGFV 540
YCPVNDATYE IPDFSPTIKG VLWENWPMDK GVFIAYDDDK VYTYVFHKDT IQGAKVILAG 600
STKVPFAHKP LLLYNGELTC QTQSGKVNNI YLSTHGFLSN LKDTGPDELR PMLAQNLMLK 660
RFSDAWEMCR ILNDEAAWNE LARACLHHME VEFAIRVYRR IGNVGIVMSL EQIKGIEDYN 720
LLAGHLAMFT NDYNLAQDLY LASSCPIAAL EMRRDLQHWD SALQLAKHLA PDQIPFISKE 780
YAIQLEFAGD YVNALAHYEK GITGDNKEHD EACLAGVAQM SIRMGDIRRG VNQALKHPSR 840
VLKRDCGAIL ENMKQFSEAA QLYEKGLYYD KAASVYIRSK NWAKVGDLLP HVSSPKIHLQ 900
YAKAKEADGR YKEAVVAYEN AKQWQSVIRI YLDHLNNPEK AVNIVRETQS LDGAKMVARF 960
FLQLGDYGSA IQFLVMSKCN NEAFTLAQQH NKMEIYADII GSEDTTNEDY QSIALYFEGE 1020
KRYLQAGKFF LLCGQYSRAL KHFLKCPSSE DNVAIEMAIE TVGQAKDELL TNQLIDHLLG 1080
ENDGMPKDAK YLFRLYMALK QYREAAQTAI IIAREEQSAG NYRNAHDVLF SMYAELKSQK 1140
IKIPSEMATN LMILHSYILV KIHVKNGDHM KGARMLIRVA NNISKFPSHI VPILTSTVIE 1200
CHRAGLKNSA FSFAAMLMRP EYRSKIDAKY KKKIEGMVRR PDISEIEEAT TPCPFCKFLL 1260
PECELLCPGC KNSIPYCIAT GRHMLKDDWT VCPHCDFPAL YSELKIMLNT ESTCPMCSER 1320
LNAAQLKKIS DCTQYLRTEE EL 1342

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologWDR19A0A452EI70Capra hircusPredictionMore>>
1:1 orthologWDR1957728Q8NEZ3Homo sapiensPredictionMore>>
1:1 orthologWdr19213081Q3UGF1CPO,CLPMus musculusPublicationMore>>
1:1 orthologWDR19461172H2QPC5Pan troglodytesPredictionMore>>
1:1 orthologWDR19I3LLZ8Sus scrofaPredictionMore>>
1:1 orthologWDR19100352314G1SME2Oryctolagus cuniculusPredictionMore>>
1:1 orthologWdr19305349F1LV01Rattus norvegicusPredictionMore>>
1:1 orthologwdr19E7FGG5Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0000902 cell morphogenesisIEA
GO:0001701 in utero embryonic developmentIEA
GO:0008406 gonad developmentIEA
GO:0030326 embryonic limb morphogenesisIEA
GO:0031076 embryonic camera-type eye developmentIEA
GO:0035721 intraciliary retrograde transportIMP
GO:0035721 intraciliary retrograde transportIBA
GO:0035735 intraciliary transport involved in cilium assemblyTAS
GO:0042471 ear morphogenesisIEA
GO:0048701 embryonic cranial skeleton morphogenesisIEA
GO:0050877 nervous system processIEA
GO:0055123 digestive system developmentIEA
GO:0060271 cilium assemblyIBA
GO:0060830 ciliary receptor clustering involved in smoothened signaling pathwayIEA
GO:0060831 smoothened signaling pathway involved in dorsal/ventral neural tube patterningIEA
GO:0061055 myotome developmentIEA
GO:0065003 protein-containing complex assemblyIMP
GO:1903441 protein localization to ciliary membraneIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0001750 photoreceptor outer segmentIEA
GO:0005737 cytoplasmIEA
GO:0005856 cytoskeletonIEA
GO:0005929 ciliumIBA
GO:0005929 ciliumTAS
GO:0030991 intraciliary transport particle AIDA
GO:0030991 intraciliary transport particle AIBA
GO:0031514 motile ciliumISS
GO:0032391 photoreceptor connecting ciliumISS
GO:0097542 ciliary tipTAS
GO:0097730 non-motile ciliumISS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-1852241 Organelle biogenesis and maintenanceTAS
R-HSA-5358351 Signaling by HedgehogTAS
R-HSA-5610787 Hedgehog 'off' stateTAS
R-HSA-5617833 Cilium AssemblyTAS
R-HSA-5620924 Intraflagellar transportTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0966 Cell projection
KW-1186 Ciliopathy
KW-0969 Cilium
KW-0970 Cilium biogenesis/degradation
KW-0963 Cytoplasm
KW-0206 Cytoskeleton
KW-0225 Disease mutation
KW-0038 Ectodermal dysplasia
KW-0901 Leber congenital amaurosis
KW-0983 Nephronophthisis
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0980 Senior-Loken syndrome
KW-0802 TPR repeat
KW-0853 WD repeat

Interpro

InterPro ID InterPro Term
IPR011990 TPR-like_helical_dom_sf
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR040379 WDR19/dyf-2
IPR039468 WDR19_WD40_rpt

PROSITE

PROSITE ID PROSITE Term
PS50294 WD_REPEATS_REGION

Pfam

Pfam ID Pfam Term
PF15911 WD40_3

Protein-protein interaction

Protein-miRNA interaction