Gene: JARID2

Basic information

Tag Content
Uniprot ID Q92833; A8K9Z6; B7Z5S5; B7Z8L0; Q5U5L5; Q86X63;
Entrez ID 3720
Genbank protein ID AAC50822.1; BAH13996.1; EAW55357.1; BAH13011.1; BAF85550.1; AAH46246.1; AAH46184.1;
Genbank nucleotide ID NM_001267040.1; XM_017010835.1; XM_005249089.3; XM_017010834.1; NM_004973.3;
Ensembl protein ID ENSP00000380478; ENSP00000341280;
Ensembl nucleotide ID ENSG00000008083
Gene name Protein Jumonji
Gene symbol JARID2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 20506229; 25155265;
Functional description Regulator of histone methyltransferase complexes that plays an essential role in embryonic development, including heart and liver development, neural tube fusion process and hematopoiesis. Acts by modulating histone methyltransferase activity and promoting the recruitment of histone methyltransferase complexes to their target genes. Binds DNA and mediates the recruitment of the PRC2 complex to target genes in embryonic stem cells. Does not have histone demethylase activity but regulates activity of various histone methyltransferase complexes. In embryonic stem cells, it associates with the PRC2 complex and inhibits trimethylation of 'Lys-27' of histone H3 (H3K27me3) by the PRC2 complex, thereby playing a key role in differentiation of embryonic stem cells and normal development. In cardiac cells, it is required to repress expression of cyclin-D1 (CCND1) by activating methylation of 'Lys-9' of histone H3 (H3K9me) by the GLP1/EHMT1 and G9a/EHMT2 histone methyltransferases. Also acts as a transcriptional repressor of ANF via its interaction with GATA4 and NKX2-5. Participates in the negative regulation of cell proliferation signaling.
Sequence
MSKERPKRNI IQKKYDDSDG IPWSEERVVR KVLYLSLKEF KNSQKRQHAE GIAGSLKTVN 60
GLLGNDQSKG LGPASEQSEN EKDDASQVSS TSNDVSSSDF EEGPSRKRPR LQAQRKFAQS 120
QPNSPSTTPV KIVEPLLPPP ATQISDLSKR KPKTEDFLTF LCLRGSPALP NSMVYFGSSQ 180
DEEEVEEEDD ETEDVKTATN NASSSCQSTP RKGKTHKHVH NGHVFNGSSR STREKEPVQK 240
HKSKEATPAK EKHSDHRADS RREQASANHP AAAPSTGSSA KGLAATHHHP PLHRSAQDLR 300
KQVSKVNGVT RMSSLGAGVT SAKKMREVRP SPSKTVKYTA TVTKGAVTYT KAKRELVKDT 360
KPNHHKPSSA VNHTISGKTE SSNAKTRKQV LSLGGASKST GPAVNGLKVS GRLNPKSCTK 420
EVGGRQLREG LQLREGLRNS KRRLEEAHQA EKPQSPPKKM KGAAGPAEGP GKKAPAERGL 480
LNGHVKKEVP ERSLERNRPK RATAGKSTPG RQAHGKADSA SCENRSTSQP ESVHKPQDSG 540
KAEKGGGKAG WAAMDEIPVL RPSAKEFHDP LIYIESVRAQ VEKFGMCRVI PPPDWRPECK 600
LNDEMRFVTQ IQHIHKLGRR WGPNVQRLAC IKKHLKSQGI TMDELPLIGG CELDLACFFR 660
LINEMGGMQQ VTDLKKWNKL ADMLRIPRTA QDRLAKLQEA YCQYLLSYDS LSPEEHRRLE 720
KEVLMEKEIL EKRKGPLEGH TENDHHKFHP LPRFEPKNGL IHGVAPRNGF RSKLKEVGQA 780
QLKTGRRRLF AQEKEVVKEE EEDKGVLNDF HKCIYKGRSV SLTTFYRTAR NIMSMCFSKE 840
PAPAEIEQEY WRLVEEKDCH VAVHCGKVDT NTHGSGFPVG KSEPFSRHGW NLTVLPNNTG 900
SILRHLGAVP GVTIPWLNIG MVFSTSCWSR DQNHLPYIDY LHTGADCIWY CIPAEEENKL 960
EDVVHTLLQA NGTPGLQMLE SNVMISPEVL CKEGIKVHRT VQQSGQFVVC FPGSFVSKVC 1020
CGYSVSETVH FATTQWTSMG FETAKEMKRR HIAKPFSMEK LLYQIAQAEA KKENGPTLST 1080
ISALLDELRD TELRQRRQLF EAGLHSSARY GSHDGSSTVA DGKKKPRKWL QLETSERRCQ 1140
ICQHLCYLSM VVQENENVVF CLECALRHVE KQKSCRGLKL MYRYDEEQII SLVNQICGKV 1200
SGKNGSIENC LSKPTPKRGP RKRATVDVPP SRLSASSSSK SASSSS 1246

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologJARID2478729A0A5F4DE24Canis lupus familiarisPredictionMore>>
1:1 orthologJARID2102184681A0A452DTS6Capra hircusPredictionMore>>
1:1 orthologJARID23720Q92833CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologJarid2G3UZT8E14.5, E15.5Mus musculusPredictionMore>>
1:1 orthologJARID2462450A0A2I3SRS8Pan troglodytesPredictionMore>>
1:1 orthologJARID2A0A287AMW5Sus scrofaPredictionMore>>
1:1 orthologJarid2681740M0RBV7Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
JARID2rs2237138T>CGenotyping -SNaPshot minisequencing technique.25155265
JARID2rs2072820T>CLinkage disequilibrium study20506229
JARID2rs2237149C>ALinkage disequilibrium study20506229
JARID2rs2299043G>ALinkage disequilibrium study20506229
JARID2rs2237138T>CLinkage disequilibrium study20506229
JARID2rs2076056C>GLinkage disequilibrium study20506229
JARID2rs2282819G>ALinkage disequilibrium study20506229

Other genetic variants/mutations

loading...

Disease or phenotype associated information

loading...

Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIEA
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specificIEA
GO:0003682 chromatin bindingISS
GO:0008134 transcription factor bindingIEA
GO:0032452 histone demethylase activityIBA
GO:0032452 histone demethylase activityISS
GO:0034647 histone demethylase activity (H3-trimethyl-K4 specific)IBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIEA
GO:0001889 liver developmentIEA
GO:0006338 chromatin remodelingIBA
GO:0007417 central nervous system developmentTAS
GO:0010614 negative regulation of cardiac muscle hypertrophyIEA
GO:0031061 negative regulation of histone methylationISS
GO:0034721 histone H3-K4 demethylation, trimethyl-H3-K4-specificIEA
GO:0045814 negative regulation of gene expression, epigeneticTAS
GO:0045892 negative regulation of transcription, DNA-templatedISS
GO:0048536 spleen developmentIEA
GO:0048538 thymus developmentIEA
GO:0048863 stem cell differentiationISS
GO:0051574 positive regulation of histone H3-K9 methylationISS
GO:0060044 negative regulation of cardiac muscle cell proliferationIEA
GO:1990830 cellular response to leukemia inhibitory factorIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005739 mitochondrionIDA
GO:0035097 histone methyltransferase complexISS
GO:0035097 histone methyltransferase complexIBA
GO:0035098 ESC/E(Z) complexIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-212165 Epigenetic regulation of gene expressionTAS
R-HSA-212300 PRC2 methylates histones and DNATAS
R-HSA-74160 Gene expression (Transcription)TAS

Drugs and compounds information

loading...

Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0156 Chromatin regulator
KW-0217 Developmental protein
KW-0221 Differentiation
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR003347 JmjC_dom
IPR003349 JmjN
IPR004198 Znf_C5HC2

PROSITE

PROSITE ID PROSITE Term
PS51011 ARID
PS51184 JMJC
PS51183 JMJN

Pfam

Pfam ID Pfam Term
PF01388 ARID
PF02373 JmjC
PF02375 JmjN
PF02928 zf-C5HC2

Protein-protein interaction

Protein-miRNA interaction