Gene: COL21A1

Basic information

Tag Content
Uniprot ID Q96P44; A6NIX5; B2R8J9; Q49A51; Q71RF4; Q8WXV8; Q9H0V3;
Entrez ID 81578
Genbank protein ID BAG36196.1; AAH45597.1; AAL50033.1; AAL02227.1; AAI26109.1; AAL86699.1; AAQ15219.1; CAB66559.1;
Genbank nucleotide ID XM_011514925.2; XM_011514926.1; NM_001318754.1; NM_001318752.1; NM_001318751.1; XM_011514924.2; NM_030820.3; NM_001318753.1; XM_011514927.1;
Ensembl protein ID ENSP00000244728; ENSP00000359855;
Ensembl nucleotide ID ENSG00000124749
Gene name Collagen alpha-1(XXI) chain
Gene symbol COL21A1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 26868259
Functional description
Sequence
MAHYITFLCM VLVLLLQNSV LAEDGEVRSS CRTAPTDLVF ILDGSYSVGP ENFEIVKKWL 60
VNITKNFDIG PKFIQVGVVQ YSDYPVLEIP LGSYDSGEHL TAAVESILYL GGNTKTGKAI 120
QFALDYLFAK SSRFLTKIAV VLTDGKSQDD VKDAAQAARD SKITLFAIGV GSETEDAELR 180
AIANKPSSTY VFYVEDYIAI SKIREVMKQK LCEESVCPTR IPVAARDERG FDILLGLDVN 240
KKVKKRIQLS PKKIKGYEVT SKVDLSELTS NVFPEGLPPS YVFVSTQRFK VKKIWDLWRI 300
LTIDGRPQIA VTLNGVDKIL LFTTTSVING SQVVTFANPQ VKTLFDEGWH QIRLLVTEQD 360
VTLYIDDQQI ENKPLHPVLG ILINGQTQIG KYSGKEETVQ FDVQKLRIYC DPEQNNRETA 420
CEIPGFNGEC LNGPSDVGST PAPCICPPGK PGLQGPKGDP GLPGNPGYPG QPGQDGKPGY 480
QGIAGTPGVP GSPGIQGARG LPGYKGEPGR DGDKGDRGLP GFPGLHGMPG SKGEMGAKGD 540
KGSPGFYGKK GAKGEKGNAG FPGLPGPAGE PGRHGKDGLM GSPGFKGEAG SPGAPGQDGT 600
RGEPGIPGFP GNRGLMGQKG EIGPPGQQGK KGAPGMPGLM GSNGSPGQPG TPGSKGSKGE 660
PGIQGMPGAS GLKGEPGATG SPGEPGYMGL PGIQGKKGDK GNQGEKGIQG QKGENGRQGI 720
PGQQGIQGHH GAKGERGEKG EPGVRGAIGS KGESGVDGLM GPAGPKGQPG DPGPQGPPGL 780
DGKPGREFSE QFIRQVCTDV IRAQLPVLLQ SGRIRNCDHC LSQHGSPGIP GPPGPIGPEG 840
PRGLPGLPGR DGVPGLVGVP GRPGVRGLKG LPGRNGEKGS QGFGYPGEQG PPGPPGPEGP 900
PGISKEGPPG DPGLPGKDGD HGKPGIQGQP GPPGICDPSL CFSVIARRDP FRKGPNY 957

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

There is no orthologous record for this gene !

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
COL21A1rs1925154GWAS26868259

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0030020 extracellular matrix structural constituent conferring tensile strengthRCA

GO:Biological Process

GO ID GO Term Evidence

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005581 collagen trimerIEA
GO:0005788 endoplasmic reticulum lumenTAS
GO:0005829 cytosolIDA
GO:0062023 collagen-containing extracellular matrixHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1474244 Extracellular matrix organizationTAS
R-HSA-1474290 Collagen formationTAS
R-HSA-1650814 Collagen biosynthesis and modifying enzymesTAS
R-HSA-8948216 Collagen chain trimerizationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0176 Collagen
KW-0963 Cytoplasm
KW-0272 Extracellular matrix
KW-0325 Glycoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR001791 Laminin_G
IPR002035 VWF_A
IPR036465 vWFA_dom_sf

PROSITE

PROSITE ID PROSITE Term
PS50234 VWFA

Pfam

Pfam ID Pfam Term
PF01391 Collagen
PF00092 VWA

Protein-miRNA interaction