Gene: CSRNP1

Basic information

Tag Content
Uniprot ID Q96S65; Q69YY5;
Entrez ID 64651
Genbank protein ID BAB61065.1; AAH38949.1; CAH10719.1; BAB79450.1;
Genbank nucleotide ID NM_001320560.1; NM_033027.3; XM_017007048.1;
Ensembl protein ID ENSP00000273153; ENSP00000422532;
Ensembl nucleotide ID ENSG00000144655
Gene name Cysteine/serine-rich nuclear protein 1
Gene symbol CSRNP1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Binds to the consensus sequence 5'-AGAGTG-3' and has transcriptional activator activity (By similarity). May have a tumor-suppressor function. May play a role in apoptosis.
Sequence
MTGLLKRKFD QLDEDNSSVS SSSSSSGCQS RSCSPSSSVS RAWDSEEEGP WDQMPLPDRD 60
FCGPRSFTPL SILKRARRER PGRVAFDGIT VFYFPRCQGF TSVPSRGGCT LGMALRHSAC 120
RRFSLAEFAQ EQARARHEKL RQRLKEEKLE MLQWKLSAAG VPQAEAGLPP VVDAIDDASV 180
EEDLAVAVAG GRLEEVSFLQ PYPARRRRAL LRASGVRRID REEKRELQAL RQSREDCGCH 240
CDRICDPETC SCSLAGIKCQ MDHTAFPCGC CREGCENPMG RVEFNQARVQ THFIHTLTRL 300
QLEQEAESFR ELEAPAQGSP PSPGEEALVP TFPLAKPPMN NELGDNSCSS DMTDSSTASS 360
SASGTSEAPD CPTHPGLPGP GFQPGVDDDS LARILSFSDS DFGGEEEEEE EGSVGNLDNL 420
SCFHPADIFG TSDPGGLASW THSYSGCSFT SGVLDENANL DASCFLNGGL EGSREGSLPG 480
TSVPPSMDAG RSSSVDLSLS SCDSFELLQA LPDYSLGPHY TSQKVSDSLD NIEAPHFPLP 540
GLSPPGDASS CFLESLMGFS EPAAEALDPF IDSQFEDTVP ASLMEPVPV 589

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCSRNP1F1MDN9Bos taurusPredictionMore>>
1:1 orthologCSRNP1485596E2RJ34Canis lupus familiarisPredictionMore>>
1:1 orthologCSRNP1102186348A0A452FLI0Capra hircusPredictionMore>>
1:1 orthologCSRNP164651Q96S65Homo sapiensPredictionMore>>
1:1 orthologCsrnp1215418P59054CPOMus musculusPublicationMore>>
1:1 orthologCSRNP1470794K7BVU1Pan troglodytesPredictionMore>>
1:1 orthologCSRNP1100519275F1SJR3Sus scrofaPredictionMore>>
1:1 orthologCSRNP1G1TKZ1Oryctolagus cuniculusPredictionMore>>
1:1 orthologCsrnp1363165D4AAK3Rattus norvegicusPredictionMore>>
1:1 orthologcsrnp1bF1QNJ1Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIEA
GO:0003674 molecular_functionND
GO:0003700 DNA-binding transcription factor activityISS
GO:0005515 protein bindingIPI
GO:0043565 sequence-specific DNA bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0006915 apoptotic processNAS
GO:0009791 post-embryonic developmentIEA
GO:0045944 positive regulation of transcription by RNA polymerase IIISS
GO:0048008 platelet-derived growth factor receptor signaling pathwayIEA
GO:0048705 skeletal system morphogenesisIEA
GO:0060021 roof of mouth developmentIEA
GO:0060325 face morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusISS

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0010 Activator
KW-0053 Apoptosis
KW-0238 DNA-binding
KW-0539 Nucleus
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR031972 CSRNP_N
IPR023260 Cys/Ser-rich_nuc_prot

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF16019 CSRNP_N

Protein-protein interaction

Protein-miRNA interaction