Gene: BRIP1

Basic information

Tag Content
Uniprot ID Q9BX63; A0A024QZ45; Q3MJE2; Q8NCI5;
Entrez ID 83990
Genbank protein ID EAW51431.1; AAI01475.1; EAW51432.1; EAW51433.1; AAI01473.1; BAC11156.1; EAW51430.1; AAK38111.1;
Genbank nucleotide ID NM_032043.2
Ensembl protein ID ENSP00000464654; ENSP00000259008;
Ensembl nucleotide ID ENSG00000136492
Gene name Fanconi anemia group J protein
Gene symbol BRIP1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 25045080
Functional description DNA-dependent ATPase and 5' to 3' DNA helicase required for the maintenance of chromosomal stability. Acts late in the Fanconi anemia pathway, after FANCD2 ubiquitination. Involved in the repair of DNA double-strand breaks by homologous recombination in a manner that depends on its association with BRCA1.
Sequence
MSSMWSEYTI GGVKIYFPYK AYPSQLAMMN SILRGLNSKQ HCLLESPTGS GKSLALLCSA 60
LAWQQSLSGK PADEGVSEKA EVQLSCCCAC HSKDFTNNDM NQGTSRHFNY PSTPPSERNG 120
TSSTCQDSPE KTTLAAKLSA KKQASIYRDE NDDFQVEKKR IRPLETTQQI RKRHCFGTEV 180
HNLDAKVDSG KTVKLNSPLE KINSFSPQKP PGHCSRCCCS TKQGNSQESS NTIKKDHTGK 240
SKIPKIYFGT RTHKQIAQIT RELRRTAYSG VPMTILSSRD HTCVHPEVVG NFNRNEKCME 300
LLDGKNGKSC YFYHGVHKIS DQHTLQTFQG MCKAWDIEEL VSLGKKLKAC PYYTARELIQ 360
DADIIFCPYN YLLDAQIRES MDLNLKEQVV ILDEAHNIED CARESASYSV TEVQLRFARD 420
ELDSMVNNNI RKKDHEPLRA VCCSLINWLE ANAEYLVERD YESACKIWSG NEMLLTLHKM 480
GITTATFPIL QGHFSAVLQK EEKISPIYGK EEAREVPVIS ASTQIMLKGL FMVLDYLFRQ 540
NSRFADDYKI AIQQTYSWTN QIDISDKNGL LVLPKNKKRS RQKTAVHVLN FWCLNPAVAF 600
SDINGKVQTI VLTSGTLSPM KSFSSELGVT FTIQLEANHI IKNSQVWVGT IGSGPKGRNL 660
CATFQNTETF EFQDEVGALL LSVCQTVSQG ILCFLPSYKL LEKLKERWLS TGLWHNLELV 720
KTVIVEPQGG EKTNFDELLQ VYYDAIKYKG EKDGALLVAV CRGKVSEGLD FSDDNARAVI 780
TIGIPFPNVK DLQVELKRQY NDHHSKLRGL LPGRQWYEIQ AYRALNQALG RCIRHRNDWG 840
ALILVDDRFR NNPSRYISGL SKWVRQQIQH HSTFESALES LAEFSKKHQK VLNVSIKDRT 900
NIQDNESTLE VTSLKYSTSP YLLEAASHLS PENFVEDEAK ICVQELQCPK IITKNSPLPS 960
SIISRKEKND PVFLEEAGKA EKIVISRSTS PTFNKQTKRV SWSSFNSLGQ YFTGKIPKAT 1020
PELGSSENSA SSPPRFKTEK MESKTVLPFT DKCESSNLTV NTSFGSCPQS ETIISSLKID 1080
ATLTRKNHSE HPLCSEEALD PDIELSLVSE EDKQSTSNRD FETEAEDESI YFTPELYDPE 1140
DTDEEKNDLA ETDRGNRLAN NSDCILAKDL FEIRTIKEVD SAREVKAEDC IDTKLNGILH 1200
IEESKIDDID GNVKTTWINE LELGKTHEIE IKNFKPSPSK NKGMFPGFK 1249

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologBRIP1A0A452EU29Capra hircusPredictionMore>>
1:1 orthologBRIP183990Q9BX63Homo sapiensPublicationMore>>
1:1 orthologBrip1237911Q5SXJ3Mus musculusPredictionMore>>
1:1 orthologBRIP1454796H2QDL5Pan troglodytesPredictionMore>>
1:1 orthologBrip1360588A0A0G2K475Rattus norvegicusPredictionMore>>
1:1 orthologbrip1794038B7ZDD5Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingNAS
GO:0003678 DNA helicase activityNAS
GO:0003678 DNA helicase activityIBA
GO:0003682 chromatin bindingIEA
GO:0003724 RNA helicase activityIEA
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0046872 metal ion bindingIEA
GO:0051539 4 iron, 4 sulfur cluster bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0000077 DNA damage checkpointNAS
GO:0006260 DNA replicationTAS
GO:0006289 nucleotide-excision repairIBA
GO:0006302 double-strand break repairNAS
GO:0006357 regulation of transcription by RNA polymerase IIIDA
GO:0007284 spermatogonial cell divisionIEA
GO:0007286 spermatid developmentIEA
GO:0008285 negative regulation of cell population proliferationIEA
GO:0009636 response to toxic substanceIEA
GO:0010629 negative regulation of gene expressionIEA
GO:0010705 meiotic DNA double-strand break processing involved in reciprocal meiotic recombinationIEA
GO:0032508 DNA duplex unwindingIEA
GO:0051026 chiasma assemblyIEA
GO:0071295 cellular response to vitaminIEA
GO:0071456 cellular response to hypoxiaIEA
GO:0072520 seminiferous tubule developmentIEA
GO:1901796 regulation of signal transduction by p53 class mediatorTAS
GO:1904385 cellular response to angiotensinIEA
GO:1990918 double-strand break repair involved in meiotic recombinationIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusNAS
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005737 cytoplasmIDA
GO:0031965 nuclear membraneIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1430728 MetabolismIEA
R-HSA-1640170 Cell CycleTAS
R-HSA-212436 Generic Transcription PathwayTAS
R-HSA-2564830 Cytosolic iron-sulfur cluster assemblyIEA
R-HSA-3700989 Transcriptional Regulation by TP53TAS
R-HSA-5633007 Regulation of TP53 ActivityTAS
R-HSA-5685938 HDR through Single Strand Annealing (SSA)TAS
R-HSA-5685942 HDR through Homologous Recombination (HRR)TAS
R-HSA-5693532 DNA Double-Strand Break RepairTAS
R-HSA-5693537 Resolution of D-Loop StructuresTAS
R-HSA-5693538 Homology Directed RepairTAS
R-HSA-5693554 Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)TAS
R-HSA-5693567 HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA)TAS
R-HSA-5693568 Resolution of D-loop Structures through Holliday Junction IntermediatesTAS
R-HSA-5693579 Homologous DNA Pairing and Strand ExchangeTAS
R-HSA-5693607 Processing of DNA double-strand break endsTAS
R-HSA-5693616 Presynaptic phase of homologous DNA pairing and strand exchangeTAS
R-HSA-6804756 Regulation of TP53 Activity through PhosphorylationTAS
R-HSA-69473 G2/M DNA damage checkpointTAS
R-HSA-69481 G2/M CheckpointsTAS
R-HSA-69620 Cell Cycle CheckpointsTAS
R-HSA-73857 RNA Polymerase II TranscriptionTAS
R-HSA-73894 DNA RepairTAS
R-HSA-74160 Gene expression (Transcription)TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0004 4Fe-4S
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-0963 Cytoplasm
KW-0903 Direct protein sequencing
KW-0225 Disease mutation
KW-0227 DNA damage
KW-0234 DNA repair
KW-0923 Fanconi anemia
KW-0347 Helicase
KW-0378 Hydrolase
KW-0408 Iron
KW-0411 Iron-sulfur
KW-0479 Metal-binding
KW-0547 Nucleotide-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR006555 ATP-dep_Helicase_C
IPR010614 DEAD_2
IPR014013 Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR006554 Helicase-like_DEXD_c2
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR013020 Rad3/Chl1-like

PROSITE

PROSITE ID PROSITE Term
PS51193 HELICASE_ATP_BIND_2

Pfam

Pfam ID Pfam Term
PF06733 DEAD_2
PF13307 Helicase_C_2

Protein-protein interaction

Protein-miRNA interaction