Gene: CRISPLD2

Basic information

Tag Content
Uniprot ID Q9H0B8; D3DUM0; Q6P590; Q6UWH0; Q6UXC6; Q96IB1; Q96K61;
Entrez ID 83716
Genbank protein ID CAB66795.1; BAB55081.1; AAH07689.1; AAQ89150.1; AAH63012.1; EAW95469.1; AAQ88779.1; EAW95468.1;
Genbank nucleotide ID NM_031476.3; XM_005256190.1;
Ensembl protein ID ENSP00000454858; ENSP00000262424; ENSP00000457655;
Ensembl nucleotide ID ENSG00000103196
Gene name Cysteine-rich secretory protein LCCL domain-containing 2
Gene symbol CRISPLD2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 20815724; 21800413; 17616516; 20662919; 25496823;
Functional description Promotes matrix assembly.
Sequence
MSCVLGGVIP LGLLFLVCGS QGYLLPNVTL LEELLSKYQH NESHSRVRRA IPREDKEEIL 60
MLHNKLRGQV QPQASNMEYM TWDDELEKSA AAWASQCIWE HGPTSLLVSI GQNLGAHWGR 120
YRSPGFHVQS WYDEVKDYTY PYPSECNPWC PERCSGPMCT HYTQIVWATT NKIGCAVNTC 180
RKMTVWGEVW ENAVYFVCNY SPKGNWIGEA PYKNGRPCSE CPPSYGGSCR NNLCYREETY 240
TPKPETDEMN EVETAPIPEE NHVWLQPRVM RPTKPKKTSA VNYMTQVVRC DTKMKDRCKG 300
STCNRYQCPA GCLNHKAKIF GTLFYESSSS ICRAAIHYGI LDDKGGLVDI TRNGKVPFFV 360
KSERHGVQSL SKYKPSSSFM VSKVKVQDLD CYTTVAQLCP FEKPATHCPR IHCPAHCKDE 420
PSYWAPVFGT NIYADTSSIC KTAVHAGVIS NESGGDVDVM PVDKKKTYVG SLRNGVQSES 480
LGTPRDGKAF RIFAVRQ 497

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCRISPLD2505329A6QLZ7Bos taurusPredictionMore>>
1:1 orthologCRISPLD2489677E2QU10Canis lupus familiarisPredictionMore>>
1:1 orthologCRISPLD2102186984A0A452FWH8Capra hircusPredictionMore>>
1:1 orthologCRISPLD2100070252A0A3Q2GZC0Equus caballusPredictionMore>>
1:1 orthologCRISPLD283716Q9H0B8CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologCrispld278892Q8BZQ2Mus musculusPredictionMore>>
1:1 orthologCRISPLD2454288K7A8K8Pan troglodytesPredictionMore>>
1:1 orthologCRISPLD2K7GSW9Sus scrofaPredictionMore>>
1:1 orthologCrispld2171547G3V9T1Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
CRISPLD2rs1546124Generation sequencing25496823
CRISPLD2rs1546124PCR-DHPLC21800413
CRISPLD2rs1546124Genotyping20815724
CRISPLD2rs2326398Genotyping20815724
CRISPLD2rs8061351Genotyping20815724
CRISPLD2rs1546124single-marker and haplotype analyses20662919
CRISPLD2rs4783099single-marker and haplotype analyses20662919
CRISPLD2rs16974880single-marker and haplotype analyses20662919
CRISPLD2rs1546124Linkage disequilibrium analysis17616516
CRISPLD2rs8061351Linkage disequilibrium analysis17616516
CRISPLD2rs2326398Linkage disequilibrium analysis17616516
CRISPLD2c.965C>G; p.T322SWES and Sanger sequencing26449438
CRISPLD2rs1546124Sequencing25496823

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005539 glycosaminoglycan bindingIBA
GO:0008201 heparin bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0030198 extracellular matrix organizationIEA
GO:0030324 lung developmentIEA
GO:0043312 neutrophil degranulationTAS
GO:0060325 face morphogenesisIMP

GO:Cellular Component

GO ID GO Term Evidence
GO:0005576 extracellular regionTAS
GO:0005615 extracellular spaceIBA
GO:0030133 transport vesicleIDA
GO:0031012 extracellular matrixIEA
GO:0034774 secretory granule lumenTAS
GO:0070062 extracellular exosomeHDA
GO:1904813 ficolin-1-rich granule lumenTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-168249 Innate Immune SystemTAS
R-HSA-168256 Immune SystemTAS
R-HSA-6798695 Neutrophil degranulationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR018244 Allrgn_V5/Tpx1_CS
IPR014044 CAP_domain
IPR035940 CAP_sf
IPR001283 CRISP-related
IPR004043 LCCL
IPR036609 LCCL_sf

PROSITE

PROSITE ID PROSITE Term
PS01010 CRISP_2
PS50820 LCCL

Pfam

Pfam ID Pfam Term
PF00188 CAP
PF03815 LCCL

Protein-protein interaction

Protein-miRNA interaction