Gene: CHRD

Basic information

Tag Content
Uniprot ID Q9H2X0; O95254; Q2M1I8; Q6UW83; Q9H2D3; Q9H2W8; Q9H2W9; Q9P0Z2; Q9P0Z3; Q9P0Z4; Q9P0Z5;
Entrez ID 8646
Genbank protein ID AAG35769.1; AAF70236.1; AAG35784.1; AAC69835.1; AAG35768.1; AAF70238.1; AAI12346.1; AAF70239.1; AAF70237.1; AAG35767.1; AAQ89285.1;
Genbank nucleotide ID NM_001304473.1; NM_001304474.1; NM_001304472.1; NM_003741.3;
Ensembl protein ID ENSP00000204604; ENSP00000408624; ENSP00000348930; ENSP00000334036; ENSP00000392794;
Ensembl nucleotide ID ENSG00000090539
Gene name Chordin
Gene symbol CHRD
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Dorsalizing factor. Key developmental protein that dorsalizes early vertebrate embryonic tissues by binding to ventralizing TGF-beta family bone morphogenetic proteins (BMPs) and sequestering them in latent complexes (By similarity).
Sequence
MPSLPAPPAP LLLLGLLLLG SRPARGAGPE PPVLPIRSEK EPLPVRGAAG CTFGGKVYAL 60
DETWHPDLGE PFGVMRCVLC ACEAPQWGRR TRGPGRVSCK NIKPECPTPA CGQPRQLPGH 120
CCQTCPQERS SSERQPSGLS FEYPRDPEHR SYSDRGEPGA EERARGDGHT DFVALLTGPR 180
SQAVARARVS LLRSSLRFSI SYRRLDRPTR IRFSDSNGSV LFEHPAAPTQ DGLVCGVWRA 240
VPRLSLRLLR AEQLHVALVT LTHPSGEVWG PLIRHRALAA ETFSAILTLE GPPQQGVGGI 300
TLLTLSDTED SLHFLLLFRG LLEPRSGGLT QVPLRLQILH QGQLLRELQA NVSAQEPGFA 360
EVLPNLTVQE MDWLVLGELQ MALEWAGRPG LRISGHIAAR KSCDVLQSVL CGADALIPVQ 420
TGAAGSASLT LLGNGSLIYQ VQVVGTSSEV VAMTLETKPQ RRDQRTVLCH MAGLQPGGHT 480
AVGICPGLGA RGAHMLLQNE LFLNVGTKDF PDGELRGHVA ALPYCGHSAR HDTLPVPLAG 540
ALVLPPVKSQ AAGHAWLSLD THCHLHYEVL LAGLGGSEQG TVTAHLLGPP GTPGPRRLLK 600
GFYGSEAQGV VKDLEPELLR HLAKGMASLM ITTKGSPRGE LRGQVHIANQ CEVGGLRLEA 660
AGAEGVRALG APDTASAAPP VVPGLPALAP AKPGGPGRPR DPNTCFFEGQ QRPHGARWAP 720
NYDPLCSLCT CQRRTVICDP VVCPPPSCPH PVQAPDQCCP VCPEKQDVRD LPGLPRSRDP 780
GEGCYFDGDR SWRAAGTRWH PVVPPFGLIK CAVCTCKGGT GEVHCEKVQC PRLACAQPVR 840
VNPTDCCKQC PVGSGAHPQL GDPMQADGPR GCRFAGQWFP ESQSWHPSVP PFGEMSCITC 900
RCGAGVPHCE RDDCSLPLSC GSGKESRCCS RCTAHRRPAP ETRTDPELEK EAEGS 955

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologCHRD102181631A0A452E873Capra hircusPredictionMore>>
1:1 orthologCHRD8646Q9H2X0Homo sapiensPredictionMore>>
1:1 orthologChrd12667Q9Z0E2CPOMus musculusPublicationMore>>
1:1 orthologCHRD460892A0A2I3TA26Pan troglodytesPredictionMore>>
1:1 orthologChrd117275A0A140TA94Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI
GO:0008201 heparin bindingIEA
GO:0019955 cytokine bindingNAS
GO:0045545 syndecan bindingIEA

GO:Biological Process

GO ID GO Term Evidence
GO:0001501 skeletal system developmentTAS
GO:0001649 osteoblast differentiationIEA
GO:0001702 gastrulation with mouth forming secondIEA
GO:0001707 mesoderm formationIEA
GO:0002053 positive regulation of mesenchymal cell proliferationIMP
GO:0021919 BMP signaling pathway involved in spinal cord dorsal/ventral patterningIMP
GO:0030336 negative regulation of cell migrationIDA
GO:0030514 negative regulation of BMP signaling pathwayIMP
GO:0030900 forebrain developmentIEA
GO:0033504 floor plate developmentTAS
GO:0045668 negative regulation of osteoblast differentiationIMP
GO:0045785 positive regulation of cell adhesionIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005615 extracellular spaceNAS

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0217 Developmental protein
KW-0325 Glycoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0964 Secreted
KW-0732 Signal

Interpro

InterPro ID InterPro Term
IPR016353 Chordin
IPR010895 CHRD
IPR001007 VWF_dom

PROSITE

PROSITE ID PROSITE Term
PS50933 CHRD
PS01208 VWFC_1
PS50184 VWFC_2

Pfam

Pfam ID Pfam Term
PF07452 CHRD
PF00093 VWC

Protein-protein interaction

Protein-miRNA interaction