Gene: SLC12A5

Basic information

Tag Content
Uniprot ID Q9H2X9; A2RTX2; Q5VZ41; Q9H4Z0; Q9ULP4;
Entrez ID 57468
Genbank protein ID AAI32669.1; BAA86490.1; AAI32671.1; AAG43493.1;
Genbank nucleotide ID NM_020708.4; NM_001134771.1;
Ensembl protein ID ENSP00000243964; ENSP00000387694;
Ensembl nucleotide ID ENSG00000124140
Gene name Solute carrier family 12 member 5
Gene symbol SLC12A5
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Mediates electroneutral potassium-chloride cotransport in mature neurons and is required for neuronal Cl(-) homeostasis. As major extruder of intracellular chloride, it establishes the low neuronal Cl(-) levels required for chloride influx after binding of GABA-A and glycine to their receptors, with subsequent hyperpolarization and neuronal inhibition (By similarity). Involved in the regulation of dendritic spine formation and maturation (PubMed:24668262).
Sequence
MSRRFTVTSL PPAGPARSPD PESRRHSVAD PRHLPGEDVK GDGNPKESSP FINSTDTEKG 60
KEYDGKNMAL FEEEMDTSPM VSSLLSGLAN YTNLPQGSRE HEEAENNEGG KKKPVQAPRM 120
GTFMGVYLPC LQNIFGVILF LRLTWVVGIA GIMESFCMVF ICCSCTMLTA ISMSAIATNG 180
VVPAGGSYYM ISRSLGPEFG GAVGLCFYLG TTFAGAMYIL GTIEILLAYL FPAMAIFKAE 240
DASGEAAAML NNMRVYGTCV LTCMATVVFV GVKYVNKFAL VFLGCVILSI LAIYAGVIKS 300
AFDPPNFPIC LLGNRTLSRH GFDVCAKLAW EGNETVTTRL WGLFCSSRFL NATCDEYFTR 360
NNVTEIQGIP GAASGLIKEN LWSSYLTKGV IVERSGMTSV GLADGTPIDM DHPYVFSDMT 420
SYFTLLVGIY FPSVTGIMAG SNRSGDLRDA QKSIPTGTIL AIATTSAVYI SSVVLFGACI 480
EGVVLRDKFG EAVNGNLVVG TLAWPSPWVI VIGSFFSTCG AGLQSLTGAP RLLQAISRDG 540
IVPFLQVFGH GKANGEPTWA LLLTACICEI GILIASLDEV APILSMFFLM CYMFVNLACA 600
VQTLLRTPNW RPRFRYYHWT LSFLGMSLCL ALMFICSWYY ALVAMLIAGL IYKYIEYRGA 660
EKEWGDGIRG LSLSAARYAL LRLEEGPPHT KNWRPQLLVL VRVDQDQNVV HPQLLSLTSQ 720
LKAGKGLTIV GSVLEGTFLE NHPQAQRAEE SIRRLMEAEK VKGFCQVVIS SNLRDGVSHL 780
IQSGGLGGLQ HNTVLVGWPR NWRQKEDHQT WRNFIELVRE TTAGHLALLV TKNVSMFPGN 840
PERFSEGSID VWWIVHDGGM LMLLPFLLRH HKVWRKCKMR IFTVAQMDDN SIQMKKDLTT 900
FLYHLRITAE VEVVEMHESD ISAYTYEKTL VMEQRSQILK QMHLTKNERE REIQSITDES 960
RGSIRRKNPA NTRLRLNVPE ETAGDSEEKP EEEVQLIHDQ SAPSCPSSSP SPGEEPEGEG 1020
ETDPEKVHLT WTKDKSVAEK NKGPSPVSSE GIKDFFSMKP EWENLNQSNV RRMHTAVRLN 1080
EVIVKKSRDA KLVLLNMPGP PRNRNGDENY MEFLEVLTEH LDRVMLVRGG GREVITIYS 1139

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologSLC12A5510157A8KC65Bos taurusPredictionMore>>
1:1 orthologSLC12A5A0A452EYG1Capra hircusPredictionMore>>
1:1 orthologSLC12A557468Q9H2X9Homo sapiensPredictionMore>>
1:1 orthologSlc12a557138Q91V14CPOMus musculusPublicationMore>>
1:1 orthologSLC12A5A0A2I3RM58Pan troglodytesPredictionMore>>
1:1 ortholog100155991A0A4X1U3U5Sus scrofaPredictionMore>>
1:1 orthologSlc12a5F1LNP4Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0015108 chloride transmembrane transporter activityIDA
GO:0015379 potassium:chloride symporter activityIDA
GO:0015379 potassium:chloride symporter activityIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0006811 ion transportIDA
GO:0006811 ion transportTAS
GO:0006873 cellular ion homeostasisIDA
GO:0006884 cell volume homeostasisIBA
GO:0006971 hypotonic responseIDA
GO:0007268 chemical synaptic transmissionIBA
GO:0007612 learningIEA
GO:0030644 cellular chloride ion homeostasisIDA
GO:0035264 multicellular organism growthIEA
GO:0040040 thermosensory behaviorIEA
GO:0042493 response to drugIEA
GO:0055064 chloride ion homeostasisIBA
GO:0055075 potassium ion homeostasisIBA
GO:0060996 dendritic spine developmentIDA
GO:1902476 chloride transmembrane transportIBA
GO:1990573 potassium ion import across plasma membraneIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005623 cellIEA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneIEA
GO:0016021 integral component of membraneIDA
GO:0045202 synapseIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-382551 Transport of small moleculesTAS
R-HSA-425393 Transport of inorganic cations/anions and amino acids/oligopeptidesTAS
R-HSA-425407 SLC-mediated transmembrane transportTAS
R-HSA-426117 Cation-coupled Chloride cotransportersTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0868 Chloride
KW-0225 Disease mutation
KW-0887 Epilepsy
KW-0325 Glycoprotein
KW-0406 Ion transport
KW-0472 Membrane
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-0630 Potassium
KW-0633 Potassium transport
KW-1185 Reference proteome
KW-0769 Symport
KW-0812 Transmembrane
KW-1133 Transmembrane helix
KW-0813 Transport

Interpro

InterPro ID InterPro Term
IPR004841 AA-permease/SLC12A_dom
IPR030358 KCC2
IPR000076 KCL_cotranspt
IPR018491 SLC12_C
IPR004842 SLC12A_fam

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF00324 AA_permease
PF03522 SLC12

Protein-protein interaction

Protein-miRNA interaction