Gene: PRDM16

Basic information

Tag Content
Uniprot ID Q9HAZ2; A6NHQ8; B1AJP7; B1AJP8; B1AJP9; B1WB48; Q8WYJ9; Q9C0I8;
Entrez ID 63976
Genbank protein ID AAG33382.1; BAB84297.1; AAI61614.1; BAB21766.2;
Genbank nucleotide ID NM_022114.3; NM_199454.2; XM_011541945.2;
Ensembl protein ID ENSP00000270722; ENSP00000367643;
Ensembl nucleotide ID ENSG00000142611
Gene name Histone-lysine N-methyltransferase PRDM16
Gene symbol PRDM16
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Binds DNA and functions as a transcriptional regulator (PubMed:12816872). Displays histone methyltransferase activity and monomethylates 'Lys-9' of histone H3 (H3K9me1) in vitro (By similarity). Probably catalyzes the monomethylation of free histone H3 in the cytoplasm which is then transported to the nucleus and incorporated into nucleosomes where SUV39H methyltransferases use it as a substrate to catalyze histone H3 'Lys-9' trimethylation (By similarity). Likely to be one of the primary histone methyltransferases along with MECOM/PRDM3 that direct cytoplasmic H3K9me1 methylation (By similarity). Functions in the differentiation of brown adipose tissue (BAT) which is specialized in dissipating chemical energy in the form of heat in response to cold or excess feeding while white adipose tissue (WAT) is specialized in the storage of excess energy and the control of systemic metabolism (By similarity). Together with CEBPB, regulates the differentiation of myoblastic precursors into brown adipose cells (By similarity). Functions as a repressor of TGF-beta signaling (PubMed:19049980).
Sequence
MRSKARARKL AKSDGDVVNN MYEPNRDLLA SHSAEDEAED SAMSPIPVGP PSPFPTSEDF 60
TPKEGSPYEA PVYIPEDIPI PADFELRESS IPGAGLGVWA KRKMEAGERL GPCVVVPRAA 120
AKETDFGWEQ ILTDVEVSPQ EGCITKISED LGSEKFCVDA NQAGAGSWLK YIRVACSCDD 180
QNLTMCQISE QIYYKVIKDI EPGEELLVHV KEGVYPLGTV PPGLDEEPTF RCDECDELFQ 240
SKLDLRRHKK YTCGSVGAAL YEGLAEELKP EGLGGGSGQA HECKDCERMF PNKYSLEQHM 300
VIHTEEREYK CDQCPKAFNW KSNLIRHQMS HDSGKRFECE NCVKVFTDPS NLQRHIRSQH 360
VGARAHACPD CGKTFATSSG LKQHKHIHST VKPFICEVCH KSYTQFSNLC RHKRMHADCR 420
TQIKCKDCGQ MFSTTSSLNK HRRFCEGKNH YTPGGIFAPG LPLTPSPMMD KAKPSPSLNH 480
ASLGFNEYFP SRPHPGSLPF STAPPTFPAL TPGFPGIFPP SLYPRPPLLP PTSLLKSPLN 540
HTQDAKLPSP LGNPALPLVS AVSNSSQGTT AAAGPEEKFE SRLEDSCVEK LKTRSSDMSD 600
GSDFEDVNTT TGTDLDTTTG TGSDLDSDVD SDPDKDKGKG KSAEGQPKFG GGLAPPGAPN 660
SVAEVPVFYS QHSFFPPPDE QLLTATGAAG DSIKAIASIA EKYFGPGFMG MQEKKLGSLP 720
YHSAFPFQFL PNFPHSLYPF TDRALAHNLL VKAEPKSPRD ALKVGGPSAE CPFDLTTKPK 780
DVKPILPMPK GPSAPASGEE QPLDLSIGSR ARASQNGGGR EPRKNHVYGE RKLGAGEGLP 840
QVCPARMPQQ PPLHYAKPSP FFMDPIYSRV EKRKVTDPVG ALKEKYLRPS PLLFHPQMSA 900
IETMTEKLES FAAMKADSGS SLQPLPHHPF NFRSPPPTLS DPILRKGKER YTCRYCGKIF 960
PRSANLTRHL RTHTGEQPYR CKYCDRSFSI SSNLQRHVRN IHNKEKPFKC HLCNRCFGQQ 1020
TNLDRHLKKH EHENAPVSQH PGVLTNHLGT SASSPTSESD NHALLDEKED SYFSEIRNFI 1080
ANSEMNQAST RTEKRADMQI VDGSAQCPGL ASEKQEDVEE EDDDDLEEDD EDSLAGKSQD 1140
DTVSPAPEPQ AAYEDEEDEE PAASLAVGFD HTRRCAEDHE GGLLALEPMP TFGKGLDLRR 1200
AAEEAFEVKD VLNSTLDSEA LKHTLCRQAK NQAYAMMLSL SEDTPLHTPS QGSLDAWLKV 1260
TGATSESGAF HPINHL 1276

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPRDM16A0A452F1P6Capra hircusPredictionMore>>
1:1 orthologPRDM1663976Q9HAZ2Homo sapiensPredictionMore>>
1:1 orthologPrdm1670673A2A935CPOE14.5Mus musculusPublicationMore>>
1:1 orthologPRDM16457227H2R9K2Pan troglodytesPredictionMore>>
1:1 orthologPrdm16100366024A0A096MJ70Rattus norvegicusPredictionMore>>
1:1 orthologprdm16B8JHX5Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003713 transcription coactivator activityISS
GO:0005515 protein bindingIPI
GO:0033613 activating transcription factor bindingIPI
GO:0043565 sequence-specific DNA bindingIDA
GO:0046332 SMAD bindingIEA
GO:0046872 metal ion bindingIEA
GO:0046974 histone methyltransferase activity (H3-K9 specific)ISS

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0022008 neurogenesisIEA
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathwayIMP
GO:0035019 somatic stem cell population maintenanceIEA
GO:0043457 regulation of cellular respirationISS
GO:0043586 tongue developmentIEA
GO:0045892 negative regulation of transcription, DNA-templatedISS
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045893 positive regulation of transcription, DNA-templatedISS
GO:0045893 positive regulation of transcription, DNA-templatedIDA
GO:0050872 white fat cell differentiationIEA
GO:0050873 brown fat cell differentiationISS
GO:0051567 histone H3-K9 methylationIEA
GO:0060021 roof of mouth developmentIEA
GO:0070828 heterochromatin organizationISS
GO:0090336 positive regulation of brown fat cell differentiationIEA
GO:0120162 positive regulation of cold-induced thermogenesisISS
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathwayIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIDA
GO:0005654 nucleoplasmIDA
GO:0005829 cytosolIDA
GO:0005829 cytosolTAS
GO:0016235 aggresomeIDA
GO:0017053 transcriptional repressor complexISS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-3214841 PKMTs methylate histone lysinesTAS
R-HSA-3247509 Chromatin modifying enzymesTAS
R-HSA-4839726 Chromatin organizationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0010 Activator
KW-0877 Alternative promoter usage
KW-0025 Alternative splicing
KW-0122 Cardiomyopathy
KW-0160 Chromosomal rearrangement
KW-0963 Cytoplasm
KW-0221 Differentiation
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0479 Metal-binding
KW-0489 Methyltransferase
KW-0539 Nucleus
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0678 Repressor
KW-0804 Transcription
KW-0805 Transcription regulation
KW-0808 Transferase
KW-0862 Zinc
KW-0863 Zinc-finger

Interpro

InterPro ID InterPro Term
IPR001214 SET_dom
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type

PROSITE

PROSITE ID PROSITE Term
PS50280 SET
PS00028 ZINC_FINGER_C2H2_1
PS50157 ZINC_FINGER_C2H2_2

Pfam

Pfam ID Pfam Term
PF00096 zf-C2H2

Protein-protein interaction

Protein-miRNA interaction