Gene: ACSS2

Basic information

Tag Content
Uniprot ID Q9NR19; A6NE90; Q5QPH2; Q5QPH3; Q8N238; Q96EL0; Q9NQP7; Q9UJ15;
Entrez ID 55902
Genbank protein ID AAH12172.1; AAF75064.1; BAC03849.1; EAW76248.1;
Genbank nucleotide ID NM_018677.3; NM_001076552.2;
Ensembl protein ID ENSP00000353804; ENSP00000253382;
Ensembl nucleotide ID ENSG00000131069
Gene name Acetyl-coenzyme A synthetase, cytoplasmic
Gene symbol ACSS2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 27229527
Functional description Catalyzes the synthesis of acetyl-CoA from short-chain fatty acids (PubMed:10843999, PubMed:28003429). Acetate is the preferred substrate (PubMed:10843999, PubMed:28003429). Can also utilize propionate with a much lower affinity (By similarity).
Sequence
MGLPEERVRS GSGSRGQEEA GAGGRARSWS PPPEVSRSAH VPSLQRYREL HRRSVEEPRE 60
FWGDIAKEFY WKTPCPGPFL RYNFDVTKGK IFIEWMKGAT TNICYNVLDR NVHEKKLGDK 120
VAFYWEGNEP GETTQITYHQ LLVQVCQFSN VLRKQGIQKG DRVAIYMPMI PELVVAMLAC 180
ARIGALHSIV FAGFSSESLC ERILDSSCSL LITTDAFYRG EKLVNLKELA DEALQKCQEK 240
GFPVRCCIVV KHLGRAELGM GDSTSQSPPI KRSCPDVQIS WNQGIDLWWH ELMQEAGDEC 300
EPEWCDAEDP LFILYTSGST GKPKGVVHTV GGYMLYVATT FKYVFDFHAE DVFWCTADIG 360
WITGHSYVTY GPLANGATSV LFEGIPTYPD VNRLWSIVDK YKVTKFYTAP TAIRLLMKFG 420
DEPVTKHSRA SLQVLGTVGE PINPEAWLWY HRVVGAQRCP IVDTFWQTET GGHMLTPLPG 480
ATPMKPGSAT FPFFGVAPAI LNESGEELEG EAEGYLVFKQ PWPGIMRTVY GNHERFETTY 540
FKKFPGYYVT GDGCQRDQDG YYWITGRIDD MLNVSGHLLS TAEVESALVE HEAVAEAAVV 600
GHPHPVKGEC LYCFVTLCDG HTFSPKLTEE LKKQIREKIG PIATPDYIQN APGLPKTRSG 660
KIMRRVLRKI AQNDHDLGDM STVADPSVIS HLFSHRCLTI Q 701

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologACSS2506459A7YWF1Bos taurusPredictionMore>>
1:1 orthologACSS2E2R0C6Canis lupus familiarisPredictionMore>>
1:1 orthologACSS2102169772A0A452FVS4Capra hircusPredictionMore>>
1:1 orthologACSS255902Q9NR19Homo sapiensPublicationMore>>
1:1 orthologAcss260525Q9QXG4Mus musculusPredictionMore>>
1:1 orthologACSS2A0A2J8JYI9Pan troglodytesPredictionMore>>
1:1 orthologACSS2F1S4Y0Sus scrofaPredictionMore>>
1:1 orthologAcss2311569G3V9U0Rattus norvegicusPredictionMore>>
1:1 orthologacss2Q6DHN4Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
ACSS2rs59088485T>C (p.Val496Ala)WES and Sanger sequencing27229527

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003987 acetate-CoA ligase activityIDA
GO:0003987 acetate-CoA ligase activityTAS
GO:0005524 ATP bindingIEA
GO:0016208 AMP bindingIC
GO:0050218 propionate-CoA ligase activityISS

GO:Biological Process

GO ID GO Term Evidence
GO:0006069 ethanol oxidationTAS
GO:0008610 lipid biosynthetic processIMP
GO:0019413 acetate biosynthetic processIEA
GO:0019427 acetyl-CoA biosynthetic process from acetateIEA
GO:0019542 propionate biosynthetic processIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005654 nucleoplasmIDA
GO:0005737 cytoplasmIC
GO:0005759 mitochondrial matrixTAS
GO:0005829 cytosolIDA
GO:0005829 cytosolTAS
GO:0043231 intracellular membrane-bounded organelleIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1430728 MetabolismTAS
R-HSA-1592230 Mitochondrial biogenesisTAS
R-HSA-1852241 Organelle biogenesis and maintenanceTAS
R-HSA-211859 Biological oxidationsTAS
R-HSA-211945 Phase I - Functionalization of compoundsTAS
R-HSA-2151201 Transcriptional activation of mitochondrial biogenesisTAS
R-HSA-71384 Ethanol oxidationTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-0963 Cytoplasm
KW-0436 Ligase
KW-0547 Nucleotide-binding
KW-0597 Phosphoprotein
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR011904 Ac_CoA_lig
IPR032387 ACAS_N
IPR025110 AMP-bd_C
IPR020845 AMP-binding_CS
IPR000873 AMP-dep_Synth/Lig
IPR042099 AMP-dep_Synthh-like_sf

PROSITE

PROSITE ID PROSITE Term
PS00455 AMP_BINDING

Pfam

Pfam ID Pfam Term
PF16177 ACAS_N
PF00501 AMP-binding
PF13193 AMP-binding_C

Protein-protein interaction

Protein-miRNA interaction