Gene: PDS5B

Basic information

Tag Content
Uniprot ID Q9NTI5; Q5R3S3; Q5W0K8; Q6NSC3; Q8IXT6; Q9H5N8; Q9Y2I5; Q9Y451;
Entrez ID 23047
Genbank protein ID AAH70274.1; CAH73160.2; AAD22134.2; AAH39256.1; CAB69911.1; BAB15584.1; CAI10806.2; BAA76823.2;
Genbank nucleotide ID XM_017020450.1; NM_015032.3;
Ensembl protein ID ENSP00000313851; ENSP00000401619;
Ensembl nucleotide ID ENSG00000083642
Gene name Sister chromatid cohesion protein PDS5 homolog B
Gene symbol PDS5B
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Regulator of sister chromatid cohesion in mitosis which may stabilize cohesin complex association with chromatin. May couple sister chromatid cohesion during mitosis to DNA replication. Cohesion ensures that chromosome partitioning is accurate in both meiotic and mitotic cells and plays an important role in DNA repair. Plays a role in androgen-induced proliferative arrest in prostate cells.
Sequence
MAHSKTRTND GKITYPPGVK EISDKISKEE MVRRLKMVVK TFMDMDQDSE EEKELYLNLA 60
LHLASDFFLK HPDKDVRLLV ACCLADIFRI YAPEAPYTSP DKLKDIFMFI TRQLKGLEDT 120
KSPQFNRYFY LLENIAWVKS YNICFELEDS NEIFTQLYRT LFSVINNGHN QKVHMHMVDL 180
MSSIICEGDT VSQELLDTVL VNLVPAHKNL NKQAYDLAKA LLKRTAQAIE PYITNFFNQV 240
LMLGKTSISD LSEHVFDLIL ELYNIDSHLL LSVLPQLEFK LKSNDNEERL QVVKLLAKMF 300
GAKDSELASQ NKPLWQCYLG RFNDIHVPIR LECVKFASHC LMNHPDLAKD LTEYLKVRSH 360
DPEEAIRHDV IVSIVTAAKK DILLVNDHLL NFVRERTLDK RWRVRKEAMM GLAQIYKKYA 420
LQSAAGKDAA KQIAWIKDKL LHIYYQNSID DRLLVERIFA QYMVPHNLET TERMKCLYYL 480
YATLDLNAVK ALNEMWKCQN LLRHQVKDLL DLIKQPKTDA SVKAIFSKVM VITRNLPDPG 540
KAQDFMKKFT QVLEDDEKIR KQLEVLVSPT CSCKQAEGCV REITKKLGNP KQPTNPFLEM 600
IKFLLERIAP VHIDTESISA LIKQVNKSID GTADDEDEGV PTDQAIRAGL ELLKVLSFTH 660
PISFHSAETF ESLLACLKMD DEKVAEAALQ IFKNTGSKIE EDFPHIRSAL LPVLHHKSKK 720
GPPRQAKYAI HCIHAIFSSK ETQFAQIFEP LHKSLDPSNL EHLITPLVTI GHIALLAPDQ 780
FAAPLKSLVA TFIVKDLLMN DRLPGKKTTK LWVPDEEVSP ETMVKIQAIK MMVRWLLGMK 840
NNHSKSGTST LRLLTTILHS DGDLTEQGKI SKPDMSRLRL AAGSAIVKLA QEPCYHEIIT 900
LEQYQLCALA INDECYQVRQ VFAQKLHKGL SRLRLPLEYM AICALCAKDP VKERRAHARQ 960
CLVKNINVRR EYLKQHAAVS EKLLSLLPEY VVPYTIHLLA HDPDYVKVQD IEQLKDVKEC 1020
LWFVLEILMA KNENNSHAFI RKMVENIKQT KDAQGPDDAK MNEKLYTVCD VAMNIIMSKS 1080
TTYSLESPKD PVLPARFFTQ PDKNFSNTKN YLPPEMKSFF TPGKPKTTNV LGAVNKPLSS 1140
AGKQSQTKSS RMETVSNASS SSNPSSPGRI KGRLDSSEMD HSENEDYTMS SPLPGKKSDK 1200
RDDSDLVRSE LEKPRGRKKT PVTEQEEKLG MDDLTKLVQE QKPKGSQRSR KRGHTASESD 1260
EQQWPEEKRL KEDILENEDE QNSPPKKGKR GRPPKPLGGG TPKEEPTMKT SKKGSKKKSG 1320
PPAPEEEEEE ERQSGNTEQK SKSKQHRVSR RAQQRAESPE SSAIESTQST PQKGRGRPSK 1380
TPSPSQPKKN VRVGRSKQAA TKENDSSEEV DVFQGSSPVD DIPQEETEEE EVSTVNVRRR 1440
SAKRERR 1447

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPDS5BF1N7G8Bos taurusPredictionMore>>
1:1 orthologPDS5B102180403A0A452DTE9Capra hircusPredictionMore>>
1:1 orthologPDS5B23047Q9NTI5Homo sapiensPredictionMore>>
1:1 orthologPds5b100710Q4VA53CPOMus musculusPublicationMore>>
1:1 orthologPDS5BA0A2I3RL13Pan troglodytesPredictionMore>>
1:1 orthologPds5b304218D3ZXE2Rattus norvegicusPredictionMore>>
1:1 orthologpds5b565592A0A0R4IP12Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIDA
GO:0005515 protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0002088 lens development in camera-type eyeIEA
GO:0006281 DNA repairIBA
GO:0007064 mitotic sister chromatid cohesionIMP
GO:0007064 mitotic sister chromatid cohesionIBA
GO:0008283 cell population proliferationTAS
GO:0008285 negative regulation of cell population proliferationIDA
GO:0042127 regulation of cell population proliferationIDA
GO:0051301 cell divisionIEA
GO:0097402 neuroblast migrationIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000775 chromosome, centromeric regionTAS
GO:0000785 chromatinIDA
GO:0000785 chromatinIBA
GO:0005634 nucleusISS
GO:0005634 nucleusIBA
GO:0005654 nucleoplasmIDA
GO:0005654 nucleoplasmTAS
GO:0005694 chromosomeTAS
GO:0005829 cytosolTAS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1640170 Cell CycleTAS
R-HSA-2467813 Separation of Sister ChromatidsTAS
R-HSA-2468052 Establishment of Sister Chromatid CohesionTAS
R-HSA-2470946 Cohesin Loading onto ChromatinTAS
R-HSA-2500257 Resolution of Sister Chromatid CohesionTAS
R-HSA-2555396 Mitotic Metaphase and AnaphaseTAS
R-HSA-68877 Mitotic PrometaphaseTAS
R-HSA-68882 Mitotic AnaphaseTAS
R-HSA-68884 Mitotic Telophase/CytokinesisTAS
R-HSA-68886 M PhaseTAS
R-HSA-69242 S PhaseTAS
R-HSA-69278 Cell Cycle, MitoticTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0131 Cell cycle
KW-0132 Cell division
KW-0498 Mitosis
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0677 Repeat

Interpro

InterPro ID InterPro Term
IPR016024 ARM-type_fold
IPR039776 Pds5

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term

Protein-protein interaction

Protein-miRNA interaction