Gene: IFT172

Basic information

Tag Content
Uniprot ID Q9UG01; A5PKZ0; B2RNU5; Q86X44; Q96HW4; Q9UFJ9; Q9ULP1;
Entrez ID 26160
Genbank protein ID EAX00573.1; AAH08024.1; CAB53678.1; AAH47294.1; AAI42730.1; AAI37127.1; BAA86493.1; AAI42676.1; CAB55914.2;
Genbank nucleotide ID NM_015662.2
Ensembl protein ID ENSP00000260570; ENSP00000352443;
Ensembl nucleotide ID ENSG00000138002
Gene name Intraflagellar transport protein 172 homolog
Gene symbol IFT172
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Required for the maintenance and formation of cilia. Plays an indirect role in hedgehog (Hh) signaling, cilia being required for all activity of the hedgehog pathway (By similarity).
Sequence
MHLKHLRTLL SPQDGAAKVT CMAWSQNNAK FAVCTVDRVV LLYDEHGERR DKFSTKPADM 60
KYGRKSYMVK GMAFSPDSTK IAIGQTDNII YVYKIGEDWG DKKVICNKFI QTSAVTCLQW 120
PAEYIIVFGL AEGKVRLANT KTNKSSTIYG TESYVVSLTT NCSGKGILSG HADGTIVRYF 180
FDDEGSGESQ GKLVNHPCPP YALAWATNSI VAAGCDRKIV AYGKEGHMLQ TFDYSRDPQE 240
REFTTAVSSP GGQSVVLGSY DRLRVFNWIP RRSIWEEAKP KEITNLYTIT ALAWKRDGSR 300
LCVGTLCGGV EQFDCCLRRS IYKNKFELTY VGPSQVIVKN LSSGTRVVLK SHYGYEVEEV 360
KILGKERYLV AHTSETLLLG DLNTNRLSEI AWQGSGGNEK YFFENENVCM IFNAGELTLV 420
EYGNNDTLGS VRTEFMNPHL ISVRINERCQ RGTEDNKKLA YLIDIKTIAI VDLIGGYNIG 480
TVSHESRVDW LELNETGHKL LFRDRKLRLH LYDIESCSKT MILNFCSYMQ WVPGSDVLVA 540
QNRNSLCVWY NIEAPERVTM FTIRGDVIGL ERGGGKTEVM VMEGVTTVAY TLDEGLIEFG 600
TAIDDGNYIR ATAFLETLEM TPETEAMWKT LSKLALEARQ LHIAERCFSA LGQVAKARFL 660
HETNEIADQV SREYGGEGTD FYQVRARLAM LEKNYKLAEM IFLEQNAVEE AMGMYQELHR 720
WDECIAVAEA KGHPALEKLR RSYYQWLMDT QQEERAGELQ ESQGDGLAAI SLYLKAGLPA 780
KAARLVLTRE ELLANTELVE HITAALIKGE LYERAGDLFE KIHNPQKALE CYRKGNAFMK 840
AVELARLAFP VEVVKLEEAW GDHLVQQKQL DAAINHYIEA RCSIKAIEAA LGARQWKKAI 900
YILDLQDRNT ASKYYPLVAQ HYASLQEYEI AEELYTKGDR TKDAIDMYTQ AGRWEQAHKL 960
AMKCMRPEDV SVLYITQAQE MEKQGKYREA ERLYVTVQEP DLAITMYKKH KLYDDMIRLV 1020
GKHHPDLLSD THLHLGKELE AEGRLQEAEY HYLEAQEWKA TVNMYRASGL WEEAYRVART 1080
QGGANAHKHV AYLWAKSLGG EAAVRLLNKL GLLEAAVDHA ADNCSFEFAF ELSRLALKHK 1140
TPEVHLKYAM FLEDEGKFEE AEAEFIRAGK PKEAVLMFVH NQDWEAAQRV AEAHDPDSVA 1200
EVLVGQARGA LEEKDFQKAE GLLLRAQRPG LALNYYKEAG LWSDALRICK DYVPSQLEAL 1260
QEEYEREATK KGARGVEGFV EQARHWEQAG EYSRAVDCYL KVRDSGNSGL AEKCWMKAAE 1320
LSIKFLPPQR NMEVVLAVGP QLIGIGKHSA AAELYLNLDL VKEAIDAFIE GEEWNKAKRV 1380
AKELDPRYED YVDQHYKEFL KNQGKVDSLV GVDVIAALDL YVEQGQWDKC IETATKQNYK 1440
ILHKYVALYA THLIREGSSA QALALYVQHG APANPQNFNI YKRIFTDMVS SPGTNCAEAY 1500
HSWADLRDVL FNLCENLVKS SEANSPAHEE FKTMLLIAHY YATRSAAQSV KQLETVAARL 1560
SVSLLRHTQL LPVDKAFYEA GIAAKAVGWD NMAFIFLNRF LDLTDAIEEG TLDGLDHSDF 1620
QDTDIPFEVP LPAKQHVPEA EREEVRDWVL TVSMDQRLEQ VLPRDERGAY EASLVAASTG 1680
VRALPCLITG YPILRNKIEF KRPGKAANKD NWNKFLMAIK TSHSPVCQDV LKFISQWCGG 1740
LPSTSFSFQ 1749

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologIFT172483013E2RF25Canis lupus familiarisPredictionMore>>
1:1 orthologIFT172A0A452EH68Capra hircusPredictionMore>>
1:1 orthologIFT17226160Q9UG01Homo sapiensPredictionMore>>
1:1 orthologIft17267661Q6VH22CPOMus musculusPublicationMore>>
1:1 orthologIFT172459104K7B8Z3Pan troglodytesPredictionMore>>
1:1 orthologIFT172100348467G1SLK9Oryctolagus cuniculusPredictionMore>>
1:1 orthologift172432389Q5RHH4Danio rerioPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence

GO:Biological Process

GO ID GO Term Evidence
GO:0001843 neural tube closureIEA
GO:0001947 heart loopingIEA
GO:0007219 Notch signaling pathwayIEA
GO:0007224 smoothened signaling pathwayIEA
GO:0007420 brain developmentIEA
GO:0008544 epidermis developmentIEA
GO:0009953 dorsal/ventral pattern formationIEA
GO:0016485 protein processingIEA
GO:0021522 spinal cord motor neuron differentiationIEA
GO:0031122 cytoplasmic microtubule organizationIEA
GO:0035735 intraciliary transport involved in cilium assemblyTAS
GO:0042073 intraciliary transportIBA
GO:0045879 negative regulation of smoothened signaling pathwayIEA
GO:0045880 positive regulation of smoothened signaling pathwayIEA
GO:0048596 embryonic camera-type eye morphogenesisIEA
GO:0050680 negative regulation of epithelial cell proliferationIEA
GO:0060021 roof of mouth developmentIEA
GO:0060173 limb developmentIEA
GO:0060271 cilium assemblyISS
GO:0060271 cilium assemblyIDA
GO:0060348 bone developmentIEA
GO:0061525 hindgut developmentIEA
GO:0070986 left/right axis specificationIEA
GO:1905515 non-motile cilium assemblyIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005929 ciliumISS
GO:0005929 ciliumTAS
GO:0005930 axonemeIBA
GO:0030992 intraciliary transport particle BISS
GO:0030992 intraciliary transport particle BIBA
GO:0036064 ciliary basal bodyIBA
GO:0097225 sperm midpieceIEA
GO:0097228 sperm principal pieceIEA
GO:0097542 ciliary tipTAS
GO:0097598 sperm cytoplasmic dropletIEA
GO:1903561 extracellular vesicleHDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-162582 Signal TransductionTAS
R-HSA-1852241 Organelle biogenesis and maintenanceTAS
R-HSA-1852241 Organelle biogenesis and maintenanceIEA
R-HSA-5358351 Signaling by HedgehogTAS
R-HSA-5610787 Hedgehog 'off' stateTAS
R-HSA-5617833 Cilium AssemblyTAS
R-HSA-5617833 Cilium AssemblyIEA
R-HSA-5620924 Intraflagellar transportTAS
R-HSA-5620924 Intraflagellar transportIEA

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0007 Acetylation
KW-0025 Alternative splicing
KW-0966 Cell projection
KW-1186 Ciliopathy
KW-0969 Cilium
KW-0217 Developmental protein
KW-0225 Disease mutation
KW-1017 Isopeptide bond
KW-0488 Methylation
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0682 Retinitis pigmentosa
KW-0802 TPR repeat
KW-0832 Ubl conjugation
KW-0853 WD repeat

Interpro

InterPro ID InterPro Term
IPR016024 ARM-type_fold
IPR011990 TPR-like_helical_dom_sf
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR036322 WD40_repeat_dom_sf

PROSITE

PROSITE ID PROSITE Term

Pfam

Pfam ID Pfam Term
PF00400 WD40

Protein-protein interaction

Protein-miRNA interaction