Gene: DICER1

Basic information

Tag Content
Uniprot ID Q9UPY3; A7E2D3; B3KRG4; E0AD28; O95943; Q9UQ02;
Entrez ID 23405
Genbank protein ID CAB38857.2; ADK25182.1; BAA76772.2; EAW81596.1; BAA78691.1; BAG52376.1; AAI50288.1;
Genbank nucleotide ID NM_001291628.1; XM_011536599.1; NM_001271282.2; XM_011536602.2; NM_177438.2; NM_001195573.1; XM_017021121.1; XM_011536601.2; NM_030621.4; XM_017021120.1; XM_011536600.2;
Ensembl protein ID ENSP00000444719; ENSP00000435681; ENSP00000343745; ENSP00000376783; ENSP00000451041; ENSP00000437256;
Ensembl nucleotide ID ENSG00000100697
Gene name Endoribonuclease Dicer
Gene symbol DICER1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 28232668
Functional description Double-stranded RNA (dsRNA) endoribonuclease playing a central role in short dsRNA-mediated post-transcriptional gene silencing. Cleaves naturally occurring long dsRNAs and short hairpin pre-microRNAs (miRNA) into fragments of twenty-one to twenty-three nucleotides with 3' overhang of two nucleotides, producing respectively short interfering RNAs (siRNA) and mature microRNAs. SiRNAs and miRNAs serve as guide to direct the RNA-induced silencing complex (RISC) to complementary RNAs to degrade them or prevent their translation. Gene silencing mediated by siRNAs, also called RNA interference, controls the elimination of transcripts from mobile and repetitive DNA elements of the genome but also the degradation of exogenous RNA of viral origin for instance. The miRNA pathway on the other side is a mean to specifically regulate the expression of target genes.
Sequence
MKSPALQPLS MAGLQLMTPA SSPMGPFFGL PWQQEAIHDN IYTPRKYQVE LLEAALDHNT 60
IVCLNTGSGK TFIAVLLTKE LSYQIRGDFS RNGKRTVFLV NSANQVAQQV SAVRTHSDLK 120
VGEYSNLEVN ASWTKERWNQ EFTKHQVLIM TCYVALNVLK NGYLSLSDIN LLVFDECHLA 180
ILDHPYREIM KLCENCPSCP RILGLTASIL NGKCDPEELE EKIQKLEKIL KSNAETATDL 240
VVLDRYTSQP CEIVVDCGPF TDRSGLYERL LMELEEALNF INDCNISVHS KERDSTLISK 300
QILSDCRAVL VVLGPWCADK VAGMMVRELQ KYIKHEQEEL HRKFLLFTDT FLRKIHALCE 360
EHFSPASLDL KFVTPKVIKL LEILRKYKPY ERQQFESVEW YNNRNQDNYV SWSDSEDDDE 420
DEEIEEKEKP ETNFPSPFTN ILCGIIFVER RYTAVVLNRL IKEAGKQDPE LAYISSNFIT 480
GHGIGKNQPR NKQMEAEFRK QEEVLRKFRA HETNLLIATS IVEEGVDIPK CNLVVRFDLP 540
TEYRSYVQSK GRARAPISNY IMLADTDKIK SFEEDLKTYK AIEKILRNKC SKSVDTGETD 600
IDPVMDDDDV FPPYVLRPDD GGPRVTINTA IGHINRYCAR LPSDPFTHLA PKCRTRELPD 660
GTFYSTLYLP INSPLRASIV GPPMSCVRLA ERVVALICCE KLHKIGELDD HLMPVGKETV 720
KYEEELDLHD EEETSVPGRP GSTKRRQCYP KAIPECLRDS YPRPDQPCYL YVIGMVLTTP 780
LPDELNFRRR KLYPPEDTTR CFGILTAKPI PQIPHFPVYT RSGEVTISIE LKKSGFMLSL 840
QMLELITRLH QYIFSHILRL EKPALEFKPT DADSAYCVLP LNVVNDSSTL DIDFKFMEDI 900
EKSEARIGIP STKYTKETPF VFKLEDYQDA VIIPRYRNFD QPHRFYVADV YTDLTPLSKF 960
PSPEYETFAE YYKTKYNLDL TNLNQPLLDV DHTSSRLNLL TPRHLNQKGK ALPLSSAEKR 1020
KAKWESLQNK QILVPELCAI HPIPASLWRK AVCLPSILYR LHCLLTAEEL RAQTASDAGV 1080
GVRSLPADFR YPNLDFGWKK SIDSKSFISI SNSSSAENDN YCKHSTIVPE NAAHQGANRT 1140
SSLENHDQMS VNCRTLLSES PGKLHVEVSA DLTAINGLSY NQNLANGSYD LANRDFCQGN 1200
QLNYYKQEIP VQPTTSYSIQ NLYSYENQPQ PSDECTLLSN KYLDGNANKS TSDGSPVMAV 1260
MPGTTDTIQV LKGRMDSEQS PSIGYSSRTL GPNPGLILQA LTLSNASDGF NLERLEMLGD 1320
SFLKHAITTY LFCTYPDAHE GRLSYMRSKK VSNCNLYRLG KKKGLPSRMV VSIFDPPVNW 1380
LPPGYVVNQD KSNTDKWEKD EMTKDCMLAN GKLDEDYEEE DEEEESLMWR APKEEADYED 1440
DFLEYDQEHI RFIDNMLMGS GAFVKKISLS PFSTTDSAYE WKMPKKSSLG SMPFSSDFED 1500
FDYSSWDAMC YLDPSKAVEE DDFVVGFWNP SEENCGVDTG KQSISYDLHT EQCIADKSIA 1560
DCVEALLGCY LTSCGERAAQ LFLCSLGLKV LPVIKRTDRE KALCPTRENF NSQQKNLSVS 1620
CAAASVASSR SSVLKDSEYG CLKIPPRCMF DHPDADKTLN HLISGFENFE KKINYRFKNK 1680
AYLLQAFTHA SYHYNTITDC YQRLEFLGDA ILDYLITKHL YEDPRQHSPG VLTDLRSALV 1740
NNTIFASLAV KYDYHKYFKA VSPELFHVID DFVQFQLEKN EMQGMDSELR RSEEDEEKEE 1800
DIEVPKAMGD IFESLAGAIY MDSGMSLETV WQVYYPMMRP LIEKFSANVP RSPVRELLEM 1860
EPETAKFSPA ERTYDGKVRV TVEVVGKGKF KGVGRSYRIA KSAAARRALR SLKANQPQVP 1920
NS 1922

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologDICER1480426E2RIN4Canis lupus familiarisPredictionMore>>
1:1 orthologDICER1102175335A0A452ESG3Capra hircusPredictionMore>>
1:1 orthologDICER123405Q9UPY3Homo sapiensPublicationMore>>
1:1 orthologDicer1Q8R418CPOMus musculusPublicationMore>>
1:1 orthologDICER1453137H2R458Pan troglodytesPredictionMore>>
1:1 orthologDICER1A0A287A263Sus scrofaPredictionMore>>
1:1 orthologDicer1299284E9PU15Rattus norvegicusPredictionMore>>
1:1 orthologdicer1324724Q6TV19Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
DICER1rs1243572A>GGWAS28232668
DICER1rs1243573A>CGWAS28232668

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIEA
GO:0003723 RNA bindingIBA
GO:0003725 double-stranded RNA bindingIDA
GO:0003725 double-stranded RNA bindingIMP
GO:0004386 helicase activityIEA
GO:0004521 endoribonuclease activityIMP
GO:0004521 endoribonuclease activityTAS
GO:0004521 endoribonuclease activityIDA
GO:0004525 ribonuclease III activityEXP
GO:0004525 ribonuclease III activityIDA
GO:0004525 ribonuclease III activityIBA
GO:0004530 deoxyribonuclease I activityIBA
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0019904 protein domain specific bindingIPI
GO:0035197 siRNA bindingIDA
GO:0046872 metal ion bindingIEA
GO:0070883 pre-miRNA bindingIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIISS
GO:0006309 apoptotic DNA fragmentationIBA
GO:0010586 miRNA metabolic processTAS
GO:0010626 negative regulation of Schwann cell proliferationISS
GO:0010629 negative regulation of gene expressionIMP
GO:0014040 positive regulation of Schwann cell differentiationISS
GO:0021675 nerve developmentISS
GO:0030422 production of siRNA involved in RNA interferenceIDA
GO:0030422 production of siRNA involved in RNA interferenceIBA
GO:0030422 production of siRNA involved in RNA interferenceTAS
GO:0030423 targeting of mRNA for destruction involved in RNA interferenceIMP
GO:0031054 pre-miRNA processingIDA
GO:0031054 pre-miRNA processingIBA
GO:0031643 positive regulation of myelinationISS
GO:0032290 peripheral nervous system myelin formationISS
GO:0032720 negative regulation of tumor necrosis factor productionIMP
GO:0033168 conversion of ds siRNA to ss siRNA involved in RNA interferenceIMP
GO:0035087 siRNA loading onto RISC involved in RNA interferenceIDA
GO:0035148 tube formationIMP
GO:0035196 production of miRNAs involved in gene silencing by miRNAISS
GO:0035196 production of miRNAs involved in gene silencing by miRNAIDA
GO:0035196 production of miRNAs involved in gene silencing by miRNAIMP
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNAIDA
GO:0036404 conversion of ds siRNA to ss siRNAIMP
GO:0038061 NIK/NF-kappaB signalingIDA
GO:0048812 neuron projection morphogenesisISS
GO:0090501 RNA phosphodiester bond hydrolysisIBA
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolyticIDA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIBA
GO:0005737 cytoplasmIBA
GO:0005793 endoplasmic reticulum-Golgi intermediate compartmentIEA
GO:0005829 cytosolTAS
GO:0016442 RISC complexIDA
GO:0016442 RISC complexIBA
GO:0030425 dendriteIEA
GO:0030426 growth coneIEA
GO:0033167 ARC complexIC
GO:0070062 extracellular exosomeIDA
GO:0070578 RISC-loading complexIDA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-203927 MicroRNA (miRNA) biogenesisTAS
R-HSA-211000 Gene Silencing by RNATAS
R-HSA-426486 Small interfering RNA (siRNA) biogenesisTAS
R-HSA-74160 Gene expression (Transcription)TAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-0963 Cytoplasm
KW-0225 Disease mutation
KW-0255 Endonuclease
KW-0347 Helicase
KW-0378 Hydrolase
KW-0460 Magnesium
KW-0464 Manganese
KW-0479 Metal-binding
KW-0540 Nuclease
KW-0547 Nucleotide-binding
KW-0597 Phosphoprotein
KW-1185 Reference proteome
KW-0677 Repeat
KW-0694 RNA-binding
KW-0943 RNA-mediated gene silencing

Interpro

InterPro ID InterPro Term
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR014720 dsRBD_dom
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR003100 PAZ_dom
IPR036085 PAZ_dom_sf
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

PROSITE

PROSITE ID PROSITE Term
PS51327 DICER_DSRBF
PS50137 DS_RBD
PS51192 HELICASE_ATP_BIND_1
PS51194 HELICASE_CTER
PS50821 PAZ
PS00517 RNASE_3_1
PS50142 RNASE_3_2

Pfam

Pfam ID Pfam Term
PF03368 Dicer_dimer
PF00271 Helicase_C
PF02170 PAZ
PF04851 ResIII
PF00636 Ribonuclease_3

Protein-protein interaction

Protein-miRNA interaction