Gene: JAG2

Basic information

Tag Content
Uniprot ID Q9Y219; Q9UE17; Q9UE99; Q9UNK8; Q9Y6P9; Q9Y6Q0;
Entrez ID 3714
Genbank protein ID AAB61285.1; AAB84215.1; AAB84216.1; CAA74706.1; AAB71189.1; AAD15562.1;
Genbank nucleotide ID NM_145159.2; NM_002226.4;
Ensembl protein ID ENSP00000328169; ENSP00000328566;
Ensembl nucleotide ID ENSG00000184916
Gene name Protein jagged-2
Gene symbol JAG2
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 20572854; 26151095; 26602496; 16641627; 19049519;
Functional description Putative Notch ligand involved in the mediation of Notch signaling. Involved in limb development (By similarity).
Sequence
MRAQGRGRLP RRLLLLLALW VQAARPMGYF ELQLSALRNV NGELLSGACC DGDGRTTRAG 60
GCGHDECDTY VRVCLKEYQA KVTPTGPCSY GHGATPVLGG NSFYLPPAGA AGDRARARAR 120
AGGDQDPGLV VIPFQFAWPR SFTLIVEAWD WDNDTTPNEE LLIERVSHAG MINPEDRWKS 180
LHFSGHVAHL ELQIRVRCDE NYYSATCNKF CRPRNDFFGH YTCDQYGNKA CMDGWMGKEC 240
KEAVCKQGCN LLHGGCTVPG ECRCSYGWQG RFCDECVPYP GCVHGSCVEP WQCNCETNWG 300
GLLCDKDLNY CGSHHPCTNG GTCINAEPDQ YRCTCPDGYS GRNCEKAEHA CTSNPCANGG 360
SCHEVPSGFE CHCPSGWSGP TCALDIDECA SNPCAAGGTC VDQVDGFECI CPEQWVGATC 420
QLDANECEGK PCLNAFSCKN LIGGYYCDCI PGWKGINCHI NVNDCRGQCQ HGGTCKDLVN 480
GYQCVCPRGF GGRHCELERD ECASSPCHSG GLCEDLADGF HCHCPQGFSG PLCEVDVDLC 540
EPSPCRNGAR CYNLEGDYYC ACPDDFGGKN CSVPREPCPG GACRVIDGCG SDAGPGMPGT 600
AASGVCGPHG RCVSQPGGNF SCICDSGFTG TYCHENIDDC LGQPCRNGGT CIDEVDAFRC 660
FCPSGWEGEL CDTNPNDCLP DPCHSRGRCY DLVNDFYCAC DDGWKGKTCH SREFQCDAYT 720
CSNGGTCYDS GDTFRCACPP GWKGSTCAVA KNSSCLPNPC VNGGTCVGSG ASFSCICRDG 780
WEGRTCTHNT NDCNPLPCYN GGICVDGVNW FRCECAPGFA GPDCRINIDE CQSSPCAYGA 840
TCVDEINGYR CSCPPGRAGP RCQEVIGFGR SCWSRGTPFP HGSSWVEDCN SCRCLDGRRD 900
CSKVWCGWKP CLLAGQPEAL SAQCPLGQRC LEKAPGQCLR PPCEAWGECG AEEPPSTPCL 960
PRSGHLDNNC ARLTLHFNRD HVPQGTTVGA ICSGIRSLPA TRAVARDRLL VLLCDRASSG 1020
ASAVEVAVSF SPARDLPDSS LIQGAAHAIV AAITQRGNSS LLLAVTEVKV ETVVTGGSST 1080
GLLVPVLCGA FSVLWLACVV LCVWWTRKRR KERERSRLPR EESANNQWAP LNPIRNPIER 1140
PGGHKDVLYQ CKNFTPPPRR ADEALPGPAG HAAVREDEED EDLGRGEEDS LEAEKFLSHK 1200
FTKDPGRSPG RPAHWASGPK VDNRAVRSIN EARYAGKE 1238

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

Protein disorder information

Orthologous information

There is no orthologous record for this gene !

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
JAG2g.19712C>TGenotyping and sequencing26151095
JAG2rs1057744Genotyping16641627
JAG2rs741859C>T (protective)iMLDR genotyping31922603
JAG2rs11624283A>GGenotyping20572854
JAG2rs2056860C>TGenotyping20572854
JAG2rs1022431C>AGenotyping20572854
JAG2rs11621316*GGenotyping26602496
JAG2haplotype combination rs1057744A/rs909236G (protective)Genotyping and TDT19049519
JAG2haplotype combination rs1057744A/rs909236A (risk)Genotyping and TDT19049519
JAG2haplotype combination rs2238287G/rs105744A/rs909236G (protective)Genotyping and TDT19049519

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005112 Notch bindingIBA
GO:0005112 Notch bindingIPI
GO:0005509 calcium ion bindingIEA
GO:0005515 protein bindingIPI
GO:0008083 growth factor activityIDA

GO:Biological Process

GO ID GO Term Evidence
GO:0001501 skeletal system developmentIEA
GO:0001701 in utero embryonic developmentIEA
GO:0003016 respiratory system processIEA
GO:0007219 Notch signaling pathwayNAS
GO:0007219 Notch signaling pathwayTAS
GO:0007283 spermatogenesisIEP
GO:0009912 auditory receptor cell fate commitmentISS
GO:0016331 morphogenesis of embryonic epitheliumIEA
GO:0030154 cell differentiationIDA
GO:0030155 regulation of cell adhesionIEA
GO:0030217 T cell differentiationIDA
GO:0042127 regulation of cell population proliferationIDA
GO:0042475 odontogenesis of dentin-containing toothIEA
GO:0042492 gamma-delta T cell differentiationIEA
GO:0045061 thymic T cell selectionIDA
GO:0045746 negative regulation of Notch signaling pathwayIBA
GO:0045747 positive regulation of Notch signaling pathwayISS
GO:1990134 epithelial cell apoptotic process involved in palatal shelf morphogenesisIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005886 plasma membraneIBA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneISS

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-157118 Signaling by NOTCHIEA
R-HSA-157118 Signaling by NOTCHTAS
R-HSA-162582 Signal TransductionIEA
R-HSA-162582 Signal TransductionTAS
R-HSA-1643685 DiseaseTAS
R-HSA-1980143 Signaling by NOTCH1IEA
R-HSA-1980143 Signaling by NOTCH1TAS
R-HSA-1980145 Signaling by NOTCH2IEA
R-HSA-2122948 Activated NOTCH1 Transmits Signal to the NucleusIEA
R-HSA-2122948 Activated NOTCH1 Transmits Signal to the NucleusTAS
R-HSA-2644602 Signaling by NOTCH1 PEST Domain Mutants in CancerTAS
R-HSA-2644603 Signaling by NOTCH1 in CancerTAS
R-HSA-2644606 Constitutive Signaling by NOTCH1 PEST Domain MutantsTAS
R-HSA-2660825 Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation MutantTAS
R-HSA-2660826 Constitutive Signaling by NOTCH1 t(7;9)(NOTCH1:M1580_K2555) Translocation MutantTAS
R-HSA-2691230 Signaling by NOTCH1 HD Domain Mutants in CancerTAS
R-HSA-2691232 Constitutive Signaling by NOTCH1 HD Domain MutantsTAS
R-HSA-2894858 Signaling by NOTCH1 HD+PEST Domain Mutants in CancerTAS
R-HSA-2894862 Constitutive Signaling by NOTCH1 HD+PEST Domain MutantsTAS
R-HSA-2979096 NOTCH2 Activation and Transmission of Signal to the NucleusIEA
R-HSA-5663202 Diseases of signal transductionTAS
R-HSA-9012852 Signaling by NOTCH3IEA
R-HSA-9012852 Signaling by NOTCH3TAS
R-HSA-9013507 NOTCH3 Activation and Transmission of Signal to the NucleusIEA
R-HSA-9013507 NOTCH3 Activation and Transmission of Signal to the NucleusTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0106 Calcium
KW-0217 Developmental protein
KW-1015 Disulfide bond
KW-0245 EGF-like domain
KW-0325 Glycoprotein
KW-0472 Membrane
KW-0914 Notch signaling pathway
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR001774 DSL
IPR001881 EGF-like_Ca-bd_dom
IPR013032 EGF-like_CS
IPR000742 EGF-like_dom
IPR000152 EGF-type_Asp/Asn_hydroxyl_site
IPR018097 EGF_Ca-bd_CS
IPR009030 Growth_fac_rcpt_cys_sf
IPR033108 Jag2
IPR026219 Jagged/Serrate
IPR011651 Notch_ligand_N
IPR001007 VWF_dom

PROSITE

PROSITE ID PROSITE Term
PS00010 ASX_HYDROXYL
PS51051 DSL
PS00022 EGF_1
PS01186 EGF_2
PS50026 EGF_3
PS01187 EGF_CA
PS50184 VWFC_2

Pfam

Pfam ID Pfam Term
PF01414 DSL
PF00008 EGF
PF07645 EGF_CA
PF12661 hEGF
PF07657 MNNL

Protein-protein interaction

Protein-miRNA interaction