Gene: TBX22

Basic information

Tag Content
Uniprot ID Q9Y458; Q5JZ06; Q96LC0; Q9HBF1;
Entrez ID 50945
Genbank protein ID AAG23749.1; EAW98588.1; AAH14194.2; AAK63189.1;
Genbank nucleotide ID NM_016954.2; NM_001109879.1; NM_001109878.1; NM_001303475.1; XM_011530972.1;
Ensembl protein ID ENSP00000362393; ENSP00000479825; ENSP00000362390; ENSP00000487295;
Ensembl nucleotide ID ENSG00000122145; ENSG00000277800;
Gene name T-box transcription factor TBX22
Gene symbol TBX22
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type CPO,CL/P
Developmental stage
Data sources Manually collected
Reference 21248356; 25918826;
Functional description Probable transcriptional regulator involved in developmental processes. This is major determinant crucial to palatogenesis.
Sequence
MALSSRARAF SVEALVGRPS KRKLQDPIQA EQPELREKKG GEEEEERRSS AAGKSEPLEK 60
QPKTEPSTSA SSGCGSDSGY GNSSESLEEK DIQMELQGSE LWKRFHDIGT EMIITKAGRR 120
MFPSVRVKVK GLDPGKQYHV AIDVVPVDSK RYRYVYHSSQ WMVAGNTDHL CIIPRFYVHP 180
DSPCSGETWM RQIISFDRMK LTNNEMDDKG HIILQSMHKY KPRVHVIEQG SSVDLSQIQS 240
LPTEGVKTFS FKETEFTTVT AYQNQQITKL KIERNPFAKG FRDTGRNRGV LDGLLETYPW 300
RPSFTLDFKT FGADTQSGSS GSSPVTSSGG APSPLNSLLS PLCFSPMFHL PTSSLGMPCP 360
EAYLPNVNLP LCYKICPTNF WQQQPLVLPA PERLASSNSS QSLAPLMMEV PMLSSLGVTN 420
SKSGSSEDSS DQYLQAPNST NQMLYGLQSP GNIFLPNSIT PEALSCSFHP SYDFYRYNFS 480
MPSRLISGSN HLKVNDDSQV SFGEGKCNHV HWYPAINHYL

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologTBX22100299988G3N243Bos taurusPredictionMore>>
1:1 orthologTBX22A0A452EVR5Capra hircusPredictionMore>>
1:1 orthologTBX2250945Q9Y458CPO,CL/PHomo sapiensPublicationMore>>
1:1 orthologTbx22245572Q8K402CPOE11.5, E12.5, E14.0, E13.5, E14.5Mus musculusPublicationMore>>
1:1 orthologTBX22473683A0A2J8KJZ2Pan troglodytesPredictionMore>>
1:1 orthologA0A4X1W2E6Sus scrofaPredictionMore>>
1:1 orthologTBX22100341565G1T5X7Oryctolagus cuniculusPredictionMore>>
1:1 orthologTbx22302369D3ZMK6Rattus norvegicusPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
TBX22c.376C>T; p.R126W Genotyping21248356
TBX22c.452G>T; p.R151LGenotyping21248356
TBX22rs7055763G>AGenotyping25918826
TBX22rs41307258T>AGenotyping25918826
TBX22IVS6-1G>C (heterozygous or hemizygous)PCR and sequencing29932961
TBX22c.874G>A; p.D292N (hemizygous)PCR and sequencing29932961

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIDA
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA bindingIBA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISA
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specificISM
GO:0001102 RNA polymerase II activating transcription factor bindingIBA
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specificIBA
GO:0003677 DNA bindingIDA
GO:0003700 DNA-binding transcription factor activityTAS
GO:0005515 protein bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0000122 negative regulation of transcription by RNA polymerase IIIDA
GO:0000122 negative regulation of transcription by RNA polymerase IIIBA
GO:0001708 cell fate specificationIBA
GO:0006355 regulation of transcription, DNA-templatedTAS
GO:0007275 multicellular organism developmentTAS
GO:0045892 negative regulation of transcription, DNA-templatedIDA
GO:0045944 positive regulation of transcription by RNA polymerase IIIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0000790 nuclear chromatinISA
GO:0005634 nucleusIDA
GO:0005634 nucleusIBA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0209 Deafness
KW-0225 Disease mutation
KW-0238 DNA-binding
KW-0242 Dwarfism
KW-0539 Nucleus
KW-0621 Polymorphism
KW-1185 Reference proteome
KW-0804 Transcription
KW-0805 Transcription regulation

Interpro

InterPro ID InterPro Term
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR001699 TF_T-box
IPR018186 TF_T-box_CS

PROSITE

PROSITE ID PROSITE Term
PS01283 TBOX_1
PS01264 TBOX_2
PS50252 TBOX_3

Pfam

Pfam ID Pfam Term
PF00907 T-box

Protein-protein interaction

Protein-miRNA interaction