Gene: PLXND1

Basic information

Tag Content
Uniprot ID Q9Y4D7; A7E2C6; C9JPZ6; Q6PJS9; Q8IZJ2; Q9BTQ2;
Entrez ID 23129
Genbank protein ID AAM49063.1; AAH03526.1; AAH11848.1; BAA31595.2; AAI50281.1;
Genbank nucleotide ID NM_015103.2
Ensembl protein ID ENSP00000317128
Ensembl nucleotide ID ENSG00000004399
Gene name Plexin-D1
Gene symbol PLXND1
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Homology search
Reference
Functional description Cell surface receptor for SEMA4A and for class 3 semaphorins, such as SEMA3A, SEMA3C and SEMA3E. Plays an important role in cell-cell signaling, and in regulating the migration of a wide spectrum of cell types. Regulates the migration of thymocytes in the medulla. Regulates endothelial cell migration. Plays an important role in ensuring the specificity of synapse formation. Required for normal development of the heart and vasculature (By similarity). Mediates anti-angiogenic signaling in response to SEMA3E.
Sequence
MAPRAAGGAP LSARAAAASP PPFQTPPRCP VPLLLLLLLG AARAGALEIQ RRFPSPTPTN 60
NFALDGAAGT VYLAAVNRLY QLSGANLSLE AEAAVGPVPD SPLCHAPQLP QASCEHPRRL 120
TDNYNKILQL DPGQGLVVVC GSIYQGFCQL RRRGNISAVA VRFPPAAPPA EPVTVFPSML 180
NVAANHPNAS TVGLVLPPAA GAGGSRLLVG ATYTGYGSSF FPRNRSLEDH RFENTPEIAI 240
RSLDTRGDLA KLFTFDLNPS DDNILKIKQG AKEQHKLGFV SAFLHPSDPP PGAQSYAYLA 300
LNSEARAGDK ESQARSLLAR ICLPHGAGGD AKKLTESYIQ LGLQCAGGAG RGDLYSRLVS 360
VFPARERLFA VFERPQGSPA ARAAPAALCA FRFADVRAAI RAARTACFVE PAPDVVAVLD 420
SVVQGTGPAC ERKLNIQLQP EQLDCGAAHL QHPLSILQPL KATPVFRAPG LTSVAVASVN 480
NYTAVFLGTV NGRLLKINLN ESMQVVSRRV VTVAYGEPVH HVMQFDPADS GYLYLMTSHQ 540
MARVKVAACN VHSTCGDCVG AADAYCGWCA LETRCTLQQD CTNSSQQHFW TSASEGPSRC 600
PAMTVLPSEI DVRQEYPGMI LQISGSLPSL SGMEMACDYG NNIRTVARVP GPAFGHQIAY 660
CNLLPRDQFP PFPPNQDHVT VEMSVRVNGR NIVKANFTIY DCSRTAQVYP HTACTSCLSA 720
QWPCFWCSQQ HSCVSNQSRC EASPNPTSPQ DCPRTLLSPL APVPTGGSQN ILVPLANTAF 780
FQGAALECSF GLEEIFEAVW VNESVVRCDQ VVLHTTRKSQ VFPLSLQLKG RPARFLDSPE 840
PMTVMVYNCA MGSPDCSQCL GREDLGHLCM WSDGCRLRGP LQPMAGTCPA PEIHAIEPLS 900
GPLDGGTLLT IRGRNLGRRL SDVAHGVWIG GVACEPLPDR YTVSEEIVCV TGPAPGPLSG 960
VVTVNASKEG KSRDRFSYVL PLVHSLEPTM GPKAGGTRIT IHGNDLHVGS ELQVLVNDTD 1020
PCTELMRTDT SIACTMPEGA LPAPVPVCVR FERRGCVHGN LTFWYMQNPV ITAISPRRSP 1080
VSGGRTITVA GERFHMVQNV SMAVHHIGRE PTLCKVLNST LITCPSPGAL SNASAPVDFF 1140
INGRAYADEV AVAEELLDPE EAQRGSRFRL DYLPNPQFST AKREKWIKHH PGEPLTLVIH 1200
KEQDSLGLQS HEYRVKIGQV SCDIQIVSDR IIHCSVNESL GAAVGQLPIT IQVGNFNQTI 1260
ATLQLGGSET AIIVSIVICS VLLLLSVVAL FVFCTKSRRA ERYWQKTLLQ MEEMESQIRE 1320
EIRKGFAELQ TDMTDLTKEL NRSQGIPFLE YKHFVTRTFF PKCSSLYEER YVLPSQTLNS 1380
QGSSQAQETH PLLGEWKIPE SCRPNMEEGI SLFSSLLNNK HFLIVFVHAL EQQKDFAVRD 1440
RCSLASLLTI ALHGKLEYYT SIMKELLVDL IDASAAKNPK LMLRRTESVV EKMLTNWMSI 1500
CMYSCLRETV GEPFFLLLCA IKQQINKGSI DAITGKARYT LSEEWLLREN IEAKPRNLNV 1560
SFQGCGMDSL SVRAMDTDTL TQVKEKILEA FCKNVPYSQW PRAEDVDLEW FASSTQSYIL 1620
RDLDDTSVVE DGRKKLNTLA HYKIPEGASL AMSLIDKKDN TLGRVKDLDT EKYFHLVLPT 1680
DELAEPKKSH RQSHRKKVLP EIYLTRLLST KGTLQKFLDD LFKAILSIRE DKPPLAVKYF 1740
FDFLEEQAEK RGISDPDTLH IWKTNSLPLR FWVNILKNPQ FVFDIDKTDH IDACLSVIAQ 1800
AFIDACSISD LQLGKDSPTN KLLYAKEIPE YRKIVQRYYK QIQDMTPLSE QEMNAHLAEE 1860
SRKYQNEFNT NVAMAEIYKY AKRYRPQIMA ALEANPTARR TQLQHKFEQV VALMEDNIYE 1920
CYSEA 1925

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database


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Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologPLXND1E2RDE1Canis lupus familiarisPredictionMore>>
1:1 orthologPLXND1A0A452DYE9Capra hircusPredictionMore>>
1:1 orthologPLXND123129Q9Y4D7Homo sapiensPredictionMore>>
1:1 orthologPlxnd167784Q3UH93CPOMus musculusPublicationMore>>
1:1 orthologPLXND1460687H2QNC7Pan troglodytesPredictionMore>>
1:1 orthologPlxnd1312652D4AA77Rattus norvegicusPredictionMore>>

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0005515 protein bindingIPI
GO:0017154 semaphorin receptor activityISS
GO:0017154 semaphorin receptor activityIBA
GO:0019904 protein domain specific bindingIPI

GO:Biological Process

GO ID GO Term Evidence
GO:0001525 angiogenesisISS
GO:0001569 branching involved in blood vessel morphogenesisIEA
GO:0003151 outflow tract morphogenesisIEA
GO:0003279 cardiac septum developmentIEA
GO:0007162 negative regulation of cell adhesionIBA
GO:0007221 positive regulation of transcription of Notch receptor targetTAS
GO:0007416 synapse assemblyISS
GO:0008360 regulation of cell shapeIBA
GO:0030334 regulation of cell migrationISS
GO:0030334 regulation of cell migrationIBA
GO:0032092 positive regulation of protein bindingIEA
GO:0035904 aorta developmentIEA
GO:0043087 regulation of GTPase activityIBA
GO:0043542 endothelial cell migrationISS
GO:0043542 endothelial cell migrationIBA
GO:0045765 regulation of angiogenesisISS
GO:0050772 positive regulation of axonogenesisIBA
GO:0060666 dichotomous subdivision of terminal units involved in salivary gland branchingIEA
GO:0060976 coronary vasculature developmentIEA
GO:0071526 semaphorin-plexin signaling pathwayISS
GO:1902287 semaphorin-plexin signaling pathway involved in axon guidanceIBA

GO:Cellular Component

GO ID GO Term Evidence
GO:0002116 semaphorin receptor complexIBA
GO:0005886 plasma membraneTAS
GO:0005887 integral component of plasma membraneISS
GO:0005887 integral component of plasma membraneIBA
GO:0030027 lamellipodiumIDA
GO:0031258 lamellipodium membraneIEA

Reactome Pathway

Reactome ID Reactome Term Evidence
R-HSA-1266738 Developmental BiologyTAS
R-HSA-157118 Signaling by NOTCHTAS
R-HSA-162582 Signal TransductionTAS
R-HSA-373755 Semaphorin interactionsTAS
R-HSA-416700 Other semaphorin interactionsTAS
R-HSA-422475 Axon guidanceTAS
R-HSA-9012852 Signaling by NOTCH3TAS
R-HSA-9013508 NOTCH3 Intracellular Domain Regulates TranscriptionTAS

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0002 3D-structure
KW-0025 Alternative splicing
KW-0037 Angiogenesis
KW-1003 Cell membrane
KW-0966 Cell projection
KW-0217 Developmental protein
KW-1015 Disulfide bond
KW-0325 Glycoprotein
KW-0472 Membrane
KW-0621 Polymorphism
KW-0675 Receptor
KW-1185 Reference proteome
KW-0677 Repeat
KW-0732 Signal
KW-0812 Transmembrane
KW-1133 Transmembrane helix

Interpro

InterPro ID InterPro Term
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR002909 IPT_dom
IPR031148 Plexin
IPR042719 Plexin-D1_Sema
IPR013548 Plexin_cytoplasmic_RasGAP_dom
IPR002165 Plexin_repeat
IPR016201 PSI
IPR008936 Rho_GTPase_activation_prot
IPR001627 Semap_dom
IPR036352 Semap_dom_sf
IPR041019 TIG1_plexin
IPR015943 WD40/YVTN_repeat-like_dom_sf

PROSITE

PROSITE ID PROSITE Term
PS51004 SEMA

Pfam

Pfam ID Pfam Term
PF08337 Plexin_cytopl
PF01437 PSI
PF01403 Sema
PF01833 TIG
PF17960 TIG_plexin

Protein-protein interaction

Protein-miRNA interaction