Gene: RAD54B

Basic information

Tag Content
Uniprot ID Q9Y620; F6WBS8;
Entrez ID 25788
Genbank protein ID AAD34331.1; AAH01965.1;
Genbank nucleotide ID NM_001205263.1; NM_012415.3;
Ensembl protein ID ENSP00000430153; ENSP00000336606;
Ensembl nucleotide ID ENSG00000197275
Gene name DNA repair and recombination protein RAD54B
Gene symbol RAD54B
Organism Homo sapiens
NCBI taxa ID 9606
Cleft type
Developmental stage
Data sources Manually collected
Reference 28232668
Functional description Involved in DNA repair and mitotic recombination. May play an active role in recombination processes in concert with other members of the RAD52 epistasis group.
Sequence
MRRSAAPSQL QGNSFKKPKF IPPGRSNPGL NEEITKLNPD IKLFEGVAIN NTFLPSQNDL 60
RICSLNLPSE ESTREINNRD NCSGKYCFEA PTLATLDPPH TVHSAPKEVA VSKEQEEKSD 120
SLVKYFSVVW CKPSKKKHKK WEGDAVLIVK GKSFILKNLE GKDIGRGIGY KFKELEKIEE 180
GQTLMICGKE IEVMGVISPD DFSSGRCFQL GGGSTAISHS SQVARKCFSN PFKSVCKPSS 240
KENRQNDFQN CKPRHDPYTP NSLVMPRPDK NHQWVFNKNC FPLVDVVIDP YLVYHLRPHQ 300
KEGIIFLYEC VMGMRMNGRC GAILADEMGL GKTLQCISLI WTLQCQGPYG GKPVIKKTLI 360
VTPGSLVNNW KKEFQKWLGS ERIKIFTVDQ DHKVEEFIKS IFYSVLIISY EMLLRSLDQI 420
KNIKFDLLIC DEGHRLKNSA IKTTTALISL SCEKRIILTG TPIQNDLQEF FALIDFVNPG 480
ILGSLSSYRK IYEEPIILSR EPSASEEEKE LGERRAAELT CLTGLFILRR TQEIINKYLP 540
PKIENVVFCR PGALQIELYR KLLNSQVVRF CLQGLLENSP HLICIGALKK LCNHPCLLFN 600
SIKEKECSST CDKNEEKSLY KGLLSVFPAD YNPLLFTEKE SGKLQVLSKL LAVIHELRPT 660
EKVVLVSNYT QTLNILQEVC KRHGYAYTRL DGQTPISQRQ QIVDGFNSQH SSFFIFLLSS 720
KAGGVGLNLI GGSHLILYDI DWNPATDIQA MSRVWRDGQK YPVHIYRLLT TGTIEEKIYQ 780
RQISKQGLCG AVVDLTKTSE HIQFSVEELK NLFTLHESSD CVTHDLLDCE CTGEEVHTGD 840
SLEKFIVSRD CQLGPHHQKS NSLKPLSMSQ LKQWKHFSGD HLNLTDPFLE RITENVSFIF 900
QNITTQATGT

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Gene expression information

Gene expression in different tissues (GTEx V7)

  

Gene expression in different tissues (ENCODE)

  

Protein structural annotations

3D structure in PDB database

There is no related protein structure for this gene.

Protein disorder information

Orthologous information

Relation Gene symbol Entrez ID UniProt ID Cleft type Developmental stage Species Evidence Details
1:1 orthologRAD54B533414F1MSA4Bos taurusPredictionMore>>
1:1 orthologRAD54B487053F1PW14Canis lupus familiarisPredictionMore>>
1:1 orthologFSBP102186978A0A452DW56Capra hircusPredictionMore>>
1:1 orthologRAD54B25788Q9Y620Homo sapiensPublicationMore>>
1:1 orthologRad54b623474Q6PFE3Mus musculusPredictionMore>>
1:1 orthologRad54b313063F1LYB7Rattus norvegicusPredictionMore>>
1:1 ortholograd54b560482E9QHY4Danio rerioPredictionMore>>

Identified variants/mutations related to cleft phenotype

Gene symbol Significant Variants/SNPS Methods PubMed ID
RAD54Brs12681366-CT (protective)HI-SNP 30172247
RAD54Brs12681366A>G; GWAS28232668
RAD54Brs957448A>GGWAS28232668

Other genetic variants/mutations

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Disease or phenotype associated information

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Gene Ontology (GO)/biological pathways

GO:Molecular Function

GO ID GO Term Evidence
GO:0003677 DNA bindingIEA
GO:0003678 DNA helicase activityTAS
GO:0003724 RNA helicase activityTAS
GO:0005515 protein bindingIPI
GO:0005524 ATP bindingIEA
GO:0015616 DNA translocase activityIDA
GO:0015616 DNA translocase activityIBA

GO:Biological Process

GO ID GO Term Evidence
GO:0000724 double-strand break repair via homologous recombinationIDA
GO:0000724 double-strand break repair via homologous recombinationIBA
GO:0006312 mitotic recombinationTAS
GO:0007131 reciprocal meiotic recombinationIBA
GO:0032508 DNA duplex unwindingIEA

GO:Cellular Component

GO ID GO Term Evidence
GO:0005634 nucleusIBA

Reactome Pathway

Reactome ID Reactome Term Evidence

Drugs and compounds information

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Functional annotations

Keywords

Keyword ID Keyword Term
KW-0025 Alternative splicing
KW-0067 ATP-binding
KW-0227 DNA damage
KW-0234 DNA repair
KW-0238 DNA-binding
KW-0347 Helicase
KW-0378 Hydrolase
KW-0547 Nucleotide-binding
KW-0539 Nucleus
KW-0597 Phosphoprotein
KW-0621 Polymorphism
KW-1185 Reference proteome

Interpro

InterPro ID InterPro Term
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR038718 SNF2-like_sf
IPR000330 SNF2_N

PROSITE

PROSITE ID PROSITE Term
PS51192 HELICASE_ATP_BIND_1
PS51194 HELICASE_CTER

Pfam

Pfam ID Pfam Term
PF00271 Helicase_C
PF00176 SNF2_N

Protein-protein interaction

Protein-miRNA interaction